Regular ArticlePhylogenetic Study of Complete Cytochrome b Genes in Musk Deer (Genus Moschus) Using Museum Samples
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Influence of pairwise genetic distance computation and reference sample size on the reliability of species identification using Cyt b and COI gene fragments in a group of native passerines
2019, Forensic Science International: GeneticsCitation Excerpt :The mitochondrial genome evolves at a rate positively correlated with speciation rate [6]. Cytochrome b gene (Cyt b) and cytochrome oxidase subunit I gene (COI) have been validated for species identification in variety of taxa [7–21] where they show distinct gaps between intra-d and inter-d [22–27]. However, most studies were based on data from a large number of species with each species represented by few (often 3–8) individuals [14,15,28–30].
Evaluation of the 16S and 12S rRNA genes as universal markers for the identification of commercial fish species in South Africa
2012, GeneCitation Excerpt :Whilst numerous studies have employed partial sequences of the 16S and 12S rRNA genes to discriminate between groups of fishes (Akimoto et al., 2002; Ardura et al., 2010; Comesaña et al., 2003; Di Finizio et al., 2007; Ishizaki et al., 2006; Zhang et al., 2007), relatively few have assessed the intra- and inter-species variation presented in these regions. Information on the intra- and inter-species variation in the COI and cyt b genes of vertebrates has been published (Lakra et al., 2011; Rock et al., 2008; Su et al., 1999; Ward et al., 2005) and the availability of such information for the 16S and 12S rRNA genes would permit greater confidence to be associated with 100% species matches, whilst aiding in the interpretation of lower percentage matches and in determining whether sequence divergences could be a result of intra-species variation (Linacre and Tobe, 2011). The coastal waters surrounding South Africa are inhabited by over 2200 different fish species (13% of which are endemic) and the country represents the most important fisheries role player on the African continent (INFOSA, 2007; van der Elst, 1997).
Plant molecular phylogeography in China and adjacent regions: Tracing the genetic imprints of Quaternary climate and environmental change in the world's most diverse temperate flora
2011, Molecular Phylogenetics and EvolutionCitation Excerpt :However, it appears that almost no detectable incipient speciation (in the form of major genetic discontinuities) has occurred on the plateau itself, at least during the Quaternary, and thus despite opportunities for refugial isolation and allopatric divergence over repeated ice-age cycles (but see Wang et al., 2009b). On the other hand, a growing body of phylogenetic studies of species radiations in various plant and animal taxa sampled from this region has invoked an important role of the various uplifts of the QTP since the mid-Miocene in triggering diversification (e.g., Asteraceae: Liu et al., 2002, 2006; Wang et al., 2009c; Pedicularis: Yang et al., 2003; see also Ree, 2005; musk deer: Su et al., 1999; oriental voles: Luo et al., 2004; catfish: Gao et al., 2005; warblers: Johansson et al., 2007). This is not the place to detail these data, but suffice it to say that estimated divergence times of major plateau lineages often pre-date the Plio-/Pleistocene, or even the formation of the plateau, suggesting that at least the ancestors of present-day plateau endemics mostly originated or migrated from adjacently distributed floras and faunas.
Predicting the current habitat refugia of Himalayan Musk deer (Moschus chrysogaster) across Nepal
2024, Ecology and EvolutionMusk Deer on the Run – Dispersal of Miocene Moschidae in the Context of Environmental Changes
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