MinireviewLife's Third Domain (Archaea): An Established Fact or an Endangered Paradigm?: A New Proposal for Classification of Organisms Based on Protein Sequences and Cell Structure☆
References (70)
- et al.
Another bridge between kingdoms: tRNA splicing in archaea and eukaryotes
Cell
(1997) Ancient ciphers: Translation in Archaea
Cell
(1997)- et al.
Archaea and the origin(s) of DNA replication proteins
Cell
(1997) The endosymbiont hypothesis revisited
Int. Rev. Cytol.
(1992)- et al.
The origin of the eukaryotic cell
Trends Biochem. Sci.
(1996) - et al.
Phylogenetic analysis of 70 kD heat shock protein sequences suggests a chimeric origin for the eukaryotic cell nucleus
Curr. Biol.
(1994) - et al.
Origin and early evolution of eukaryotes inferred from the amino acid sequences of translation elongation factors 1alpha/Tu and 2/G
Adv. Biophys.
(1996) - et al.
Lessons from an Archaeal genome: what are we learning from Methanococcus jannaschii?
Trend. Genet.
(1996) - et al.
Archaeal genomics: An overview
Cell
(1997) Origin of life—Facing up to the physical setting
Cell
(1991)
Archaeal histones, nucleosomes, and transcription initiation
Cell
The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny
Proc. Natl. Acad. Sci. USA
Evolution of glutamate dehydrogenase genes: Evidence for two paralogous protein families and unusual branching patterns of the archaebacteria in the universal tree of life
J. Mol. Evol.
Evolutionary relationships of bacterial and archaeal glutamine synthetase genes
J. Mol. Evol.
Root of the universal tree of life based on ancient aminoacyl-tRNA synthetase gene duplications
Proc. Natl. Acad. Sci. USA
Archaea and the prokaryote-to-eukaryote transition
Microbiol. Rev.
A common evolutionary origin for mitochondria and hydrogenosomes
Proc. Natl. Acad. Sci. USA
Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
Science
The origin of eukaryotic and archaebacterial cells
Ann. N. Y. Acad. Sci.
Origins of secondary metabolism
Ciba Found. Symp.
Titres et Travaux Scientifiques (1906–1937) de Edouard Chatton
Of archae and eo: What's in a name?
Proc. Natl. Acad. Sci. USA
Determining divergence times of the major kingdoms of living organisms with a protein clock
Science
Whole-genome random sequencing and assembly ofHaemophilus influenzae
Science
Protein versus rRNA: Problems in rooting the universal tree of life
ASM News
The minimal gene complement of Mycoplasma genitalium
Science
Presence of a mitochondrial-type 70-kDa heat shock protein inTrichomonas vaginalis
Proc. Natl. Acad. Sci. USA
Evolution of the vacuolar H+-ATPase: Implications for the origin of eukaryotes
Proc. Natl. Acad. Sci. USA
Protein-based phylogenies support a chimeric origin for the eukaryotic genome
Mol. Biol. Evol.
Ueber die isolierte farbung der Schizomyceten in Schnitt und Trockenpraparaten
Fortschr. Med.
Cloning ofGiardia lamblia
Proc. Natl. Acad. Sci. USA
Phylogenetic analysis of the 90 kD heat shock family of protein sequences and an examination of the relationship among animals, plants, and fungi species
Mol. Biol. Evol.
Protein phylogenies and signature sequences: Evolutionary relationships within prokaryotes and between prokaryotes and eukaryotes
Antonie van Leeuwenhoek
Sequencing of heat shock protein 70 (DnaK) homologs fromDeinococcus proteolyticusThermomicrobium roseum
J. Bacteriol.
Cited by (37)
Bacteriome and Archaeome: The Core Family Under the Microbiomic Roof
2020, Microbiomics: Dimensions, Applications, and Translational Implications of Human and Environmental Microbiome ResearchEvolutionary aspects of lipoxygenases and genetic diversity of human leukotriene signaling
2015, Progress in Lipid ResearchCitation Excerpt :This classification system recognizes the fundamental divide between the two procaryotic domains (archaea, bacteria) and also suggests that according to sequence comparisons archaea are more closely related to eucarya than to bacteria. Although the three-domain theory has been challenged, since sequence features and phylogenies of some highly conserved proteins are inconsistent with this concept [47,48], it is frequently used and widely accepted [49]. The eucarya domain [50] was later on subdivided into 6 different supergroups (Excavata, Amoebozoa, Opishokonta, Rhizaria Chromalveolata, Archaeplastida).
The Cytomatrix as a Cooperative System of Macromolecular and Water Networks
2006, Current Topics in Developmental BiologyCitation Excerpt :The nuclear genome contains contributions from a gram‐negative eubacterium and an archaean, and the eucaryotic cell can be viewed as a chimera (Gupta and Golding, 1996) or the result of serial endosymbiosis (Margulis, 2004). Mitochondria, chloroplasts, and nucleus all have an endosymbiotic origin (Gupta, 1998; Gupta and Golding, 1996; Lake and Rivera, 1994; Margulis, 1993, 1996; Margulis and Bermudes, 1985; Margulis and Sagan, 2002; Margulis et al., 2000). Which partner was the host, and which the guest?
Evolutionary and functional genomics of the Archaea
2005, Current Opinion in MicrobiologyAnalysis of phenetic trees based on metabolic capabilites across the three domains of life
2004, Journal of Molecular BiologyCitation Excerpt :The classification of organisms is one of the major challenges in biology.1 A classification based on rRNA sequences as a phylogenetic marker established the three-domain tree of life, namely Eukarya, Bacteria (eubacteria) and Archaea (archaebacteria),2,3 although this classification has been questioned.4–6 Once all the information present in several genomes has become available, there are vast amounts of data that can be used comparatively to examine multiple features of the genomes of different species, thereby giving rise to a “genome-based” phylogenetic approach.
- ☆
M. KatesD. J. KushnerA. T. Matheson
- f1
E-mail: [email protected]