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ISAG/IUIS-VIC Comparative MHC Nomenclature Committee report, 2005

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Abstract

Nomenclature for Major Histocompatibility Complex (MHC) genes and alleles in species other than humans and mice has historically been overseen either informally by groups generating sequences, or by formal nomenclature committees set up by the International Society for Animal Genetics (ISAG). The suggestion for a Comparative MHC Nomenclature Committee was made at the ISAG meeting held in Göttingen, Germany (2002), and the committee met for the first time at the Institute for Animal Health, Compton, UK in January 2003. To publicize its activity and extend its scope, the committee organized a workshop at the International Veterinary Immunology Symposium (IVIS) in Quebec (2004) where it was decided to affiliate with the Veterinary Immunology Committee (VIC) of the International Union of Immunological Societies (IUIS). The goals of the committee are to establish a common framework and guidelines for MHC nomenclature in any species; to demonstrate this in the form of a database that will ensure that in the future, researchers can easily access a source of validated MHC sequences for any species; to facilitate discussion on this area between existing groups and nomenclature committees. A further meeting of the committee was held in September 2005 in Glasgow, UK. This was attended by most of the existing committee members with some additional invited participants (Table 1). The aims of this meeting were to facilitate the inclusion of new species onto the database, to discuss extension, improvement and funding of the database, and to address a number of nomenclature issues raised at the previous workshop.

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References

  • Antonarakis SE (1998) Recommendations for a nomenclature system for human gene mutations. Nomenclature Working Group. Hum Mutat 11:1–3

    Article  PubMed  CAS  Google Scholar 

  • Davies CJ, Andersson L, Ellis SA, Hensen EJ, Lewin HA, Mikko S, Muggli-Cockett NE, van der Poel JJ, Russell GC (1997) Nomenclature for factors of the BoLA system, 1996: report of the ISAG BoLA Nomenclature Committee. Anim Genet 28:159–168

    Article  CAS  Google Scholar 

  • Daza-Vamenta R, Glusman G, Rowen L, Guthrie B, Geraghty DE (2004) Genetic divergence of the rhesus macaque major histocompatibility complex. Genome Res 14:1501–1515

    Article  PubMed  CAS  Google Scholar 

  • den Dunnen JT, Antonarakis SE (2001) Nomenclature for the description of human sequence variations. Hum Genet 109:121–124

    Article  Google Scholar 

  • Doxiadis GG, Otting N, de Groot NG, de Groot N, Rouweler AJ, Noort R, Verschoor EJ, Bontjer I, Bontrop RE (2003) Evolutionary stability of MHC class II haplotypes in diverse rhesus macaque populations. Immunogenetics 55:540–551

    Article  PubMed  CAS  Google Scholar 

  • Ellis SA, Ballingall KT (1999) Cattle MHC: evolution in action? Immunol Rev 167:159–168

    Article  PubMed  CAS  Google Scholar 

  • Hassanin A, Ropiquet A (2004) Molecular phylogeny of the tribe Bovini (Bovidae, Bovinae). Mol Phylogenet Evol 33:896–907

    Article  PubMed  CAS  Google Scholar 

  • Kelley J, Walter L, Trowsdale J (2005) Comparative genomics of major histocompatibility complexes. Immunogenetics 56:683–695

    Article  PubMed  CAS  Google Scholar 

  • Kennedy LJ, Angles JM, Barnes A, Carter SD, Francino O, Gerlach JA, Happ GM, Ollier WER, Thomson W, Wagner JL (2001) Nomenclature for factors of the dog major histocompatibility system (DLA), 2000: second report of the ISAG DLA Nomenclature Committee. Anim Genet 32:193–199

    Article  PubMed  CAS  Google Scholar 

  • Klein J, Bontrop RE, Dawkins RL, Erlich HA, Gyllensten UB, Heise ER, Jones PP, Parham P, Wakeland EK, Watkins DI (1990) Nomenclature for the major histocompatibility complexes of different species: a proposal. Immunogenetics 31:217–219

    PubMed  CAS  Google Scholar 

  • Kumanovics A, Madan A, Qin S, Rowen L, Hood L, Fischer Lindahl K (2002) QUOD ERAT FACIENDUM: sequence analysis of the H2-D and H2-Q regions of 129/SvJ mice. Immunogenetics 54:479–489

    Article  PubMed  CAS  Google Scholar 

  • Miller MM, Bacon LD, Hala K, Hunt HD, Ewald SJ, Kaufman J, Zoorob R, Briles WE (2004) 2004 Nomenclature for the chicken major histocompatibility (B and Y) complex. Immunogenetics 56:261–279

    PubMed  CAS  Google Scholar 

  • Otting N, Heijmans CM, Noort RC, de Groot NG, Doxiadis GG, van Rood JJ, Watkins DI, Bontrop RE (2005) Unparalleled complexity of the MHC class I region in rhesus macaques. Proc Natl Acad Sci USA 102:1626–1631

    Article  PubMed  CAS  Google Scholar 

  • Parham P (1999) Virtual reality in the MHC. Immunol Rev 167:5–15

    Article  PubMed  CAS  Google Scholar 

  • Robinson J, Malik A, Parham P, Bodmer JG, Marsh SGE (2000) IMGT/HLA database—a sequence database for the human major histocompatibility complex. Tissue Antigens 55:280–287

    Article  PubMed  CAS  Google Scholar 

  • Robinson J, Waller MJ, Parham P, de Groot N, Bontrop R, Kennedy LJ, Stoehr P, Marsh SGE (2003) IMGT/HLA and IMGT/MHC: sequence databases for the study of the major histocompatibility complex. Nucleic Acids Res 31:311–314

    Article  PubMed  CAS  Google Scholar 

  • Robinson J, Waller MJ, Stoehr P, Marsh SGE (2005) IPD—the Immuno Polymorphism Database. Nucleic Acids Res 331:D523–D526

    Google Scholar 

  • Roos C, Walter L (2005) Considerable haplotypic diversity in the RT1-CE class I gene region of the rat major histocompatibility complex. Immunogenetics 56:773–777

    Article  PubMed  CAS  Google Scholar 

  • Russell GC, Davies CJ, Andersson L, Ellis SA, Hensen EJ, Lewin HA, Mikko S, Muggli-Cockett NE, van der Poel JJ (1997) BoLA class II nucleotide sequences, 1996: report of the ISAG BoLA Nomenclature Committee. Anim Genet 28:169–180

    Article  CAS  Google Scholar 

  • Smith DM, Lunney JK, Martens GW, Ando A, Lee JH, Ho CS, Schook L, Renard C, Chardon P (2005) Nomenclature for factors of the SLA class I system, 2004. Tissue Antigens 65:136–149

    Article  PubMed  CAS  Google Scholar 

  • Smith DM, Lunney JK, Ho CS, Martens GW, Ando A, Lee JH, Schook L, Renard C, Chardon P (2005) Nomenclature for factors of the swine leukocyte antigen class II system, 2005. Tissue Antigens 66(6):623

    Article  PubMed  CAS  Google Scholar 

  • Stet RJM, Kruiswijk CP, Dixon B (2003) Major histocompatibility lineages and immune gene function in teleost fishes: the road not taken. CRC Crit Rev Immunol 23:441–471

    CAS  Google Scholar 

  • Stewart CA, Horton R, Allcock RJ, Ashurst JL, Atrazhev AM, Coggill P, Dunham I, Forbes S, Halls K, Howson JM, Humphray SJ, Hunt S, Mungall AJ, Osoegawa K, Palmer S, Roberts AN, Rogers J, Sims S, Wang Y, Wilming LG, Elliott JF, de Jong PJ, Sawcer S, Todd JA, Trowsdale J, Beck S (2004) Complete MHC haplotype sequencing for common disease gene mapping. Genome Res 14:1176–1187

    Article  PubMed  CAS  Google Scholar 

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Acknowledgements

The Comparative MHC Nomenclature Committee would like to thank IUIS-VIC for funding the meeting that led to this report and the University of Glasgow for hosting the meeting.

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Correspondence to Shirley A. Ellis.

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Ellis, S.A., Bontrop, R.E., Antczak, D.F. et al. ISAG/IUIS-VIC Comparative MHC Nomenclature Committee report, 2005. Immunogenetics 57, 953–958 (2006). https://doi.org/10.1007/s00251-005-0071-4

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  • DOI: https://doi.org/10.1007/s00251-005-0071-4

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