Abstract
The identification of immunogenic polypeptides of pathogens is helpful for the development of diagnostic assays and therapeutic applications like vaccines. Routinely, these proteins are identified by two-dimensional polyacrylamide gel electrophoresis and Western blot using convalescent serum, followed by mass spectrometry. This technology, however, is limited, because low or differentially expressed proteins, e.g. dependent on pathogen–host interaction, cannot be identified. In this work, we developed and improved a M13 genomic phage display-based method for the selection of immunogenic polypeptides of Mycoplasma hyopneumoniae, a pathogen causing porcine enzootic pneumonia. The fragmented genome of M. hyopneumoniae was cloned into a phage display vector, and the genomic library was packaged using the helperphage Hyperphage to enrich open reading frames (ORFs). Afterwards, the phage display library was screened by panning using convalescent serum. The analysis of individual phage clones resulted in the identification of five genes encoding immunogenic proteins, only two of which had been previously identified and described as immunogenic. This M13 genomic phage display, directly combining ORF enrichment and the presentation of the corresponding polypeptide on the phage surface, complements proteome-based methods for the identification of immunogenic polypeptides and is particularly well suited for the use in mycoplasma species.
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Adams C, Pitzer J, Minion FC (2005) In vivo expression analysis of the P97 and P102 paralog families of Mycoplasma hyopneumoniae. Infect Immun 73:7784–7787
Beghetto E, Gargano N, Ricci S, Garufi G, Peppoloni S, Montagnani F, Oggioni M, Pozzi G, Felici F (2006) Discovery of novel Streptococcus pneumoniae antigens by screening a whole-genome lambda-display library. FEMS Microbiol Lett 262:14–21
Breitling F, Dübel S, Seehaus T, Klewinghaus I, Little M (1991) A surface expression vector for antibody screening. Gene 104:147–153
Cochrane D, Webster C, Masih G, McCafferty J (2000) Identification of natural ligands for SH2 domains from a phage display cDNA library. J Mol Biol 297:89–97
Conceição FR, Moreira AN, Dellagostin OA (2006) A recombinant chimera composed of R1 repeat region of Mycoplasma hyopneumoniae P97 adhesin with Escherichia coli heat-labile enterotoxin B subunit elicits immune response in mice. Vaccine 24:5734–5743
Crameri R, Kodzius R, Konthur Z, Lehrach H, Blaser K, Walter G (2001) Tapping allergen repertoires by advanced cloning technologies. Int Arch Allergy Immunol 124:43–47
Delvecchio VG et al (2006) Proteomic profiling and identification of immunodominant spore antigens of Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis. Appl Environ Microbiol 72:6355–6363
Eshaghi M, Tan WS, Yusoff K (2005) Identification of epitopes in the nucleocapsid protein of Nipah virus using a linear phage-displayed random peptide library. J Med Virol 75:147–152
Faix PH, Burg MA, Gonzales M, Ravey EP, Baird A, Larocca D (2004) Phage display of cDNA libraries: enrichment of cDNA expression using open reading frame selection. Biotechniques 36:1018–1022
Ferreira HB, De Castro LA (2007) A preliminary survey of M. hyopneumoniae virulence factors based on comparitive genomic analysis. Gen Mol Biol 30:245–255
Futo S, Seto Y, Mitsuse S, Mori Y, Suzuki T, Kawai K (1995) Molecular cloning of a 46-kilodalton surface antigen (P46) gene from Mycoplasma hyopneumoniae: direct evidence of CGG codon usage for arginine. J Bacteriol 177:1915–1917
Gibson DG et al (2008) Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome. Science 319:1215–1220
Glass JI, Assad-Garcia N, Alperovich N, Yooseph S, Lewis MR, Maruf M, Hutchison CA, Smith HO, Venter JC (2006) Essential genes of a minimal bacterium. Proc Natl Acad Sci USA 103:425–430
Goldsmith ME, Konigsberg WH (1977) Adsorption protein of the bacteriophage fd: isolation, molecular properties, and location in the virus. Biochemistry 16:2686–2694
Govarts C, Somers K, Hupperts R, Stinissen P, Somers V (2007) Exploring cDNA phage display for autoantibody profiling in the serum of multiple sclerosis patients: optimization of the selection procedure. Ann N Y Acad Sci 1109:372–384
Hertveldt K, Dechassa ML, Robben J, Volckaert G (2003) Identification of Gal80p-interacting proteins by Saccharomyces cerevisiae whole genome phage display. Gene 307:141–149
Hoelzle LE, Hoelzle K, Harder A, Ritzmann M, Aupperle H, Schoon H, Heinritzi K, Wittenbrink MM (2007) First identification and functional characterization of an immunogenic protein in unculturable haemotrophic Mycoplasmas (Mycoplasma suis HspA1). FEMS Immunol Med Microbiol 49:215–223
Hsu T, Minion FC (1998a) Identification of the cilium binding epitope of the Mycoplasma hyopneumoniae P97 adhesin. Infect Immun 66:4762–4766
Hsu T, Minion FC (1998b) Molecular analysis of the P97 cilium adhesin operon of Mycoplasma hyopneumoniae. Gene 214:13–23
Hsu T, Artiushin S, Minion FC (1997) Cloning and functional analysis of the P97 swine cilium adhesin gene of Mycoplasma hyopneumoniae. J Bacteriol 179:1317–1323
Huntley JF, Conley PG, Hagman KE, Norgard MV (2007) Characterization of Francisella tularensis outer membrane proteins. J Bacteriol 189:561–574
Hust M, Dübel S (2004) Mating antibody phage display with proteomics. Trends Biotechnol 22:8–14
Hust M, Meysing M, Schirrmann T, Selke M, Meens J, Gerlach G, Dübel S (2006) Enrichment of open reading frames presented on bacteriophage M13 using hyperphage. Biotechniques 41:335–342
Hust M, Dübel S, Schirrmann T (2007) Selection of recombinant antibodies from antibody gene libraries. Methods Mol Biol 408:243–255
Jacobsen ID, Meens J, Baltes N, Gerlach G (2005) Differential expression of non-cytoplasmic Actinobacillus pleuropneumoniae proteins induced by addition of bronchoalveolar lavage fluid. Vet Microbiol 109:245–256
Kim MF, Heidari MB, Stull SJ, McIntosh MA, Wise KS (1990) Identification and mapping of an immunogenic region of Mycoplasma hyopneumoniae p65 surface lipoprotein expressed in Escherichia coli from a cloned genomic fragment. Infect Immun 58:2637–2643
Kodzius R, Rhyner C, Konthur Z, Buczek D, Lehrach H, Walter G, Crameri R (2003) Rapid identification of allergen-encoding cDNA clones by phage display and high-density arrays. Comb Chem High Throughput Screen 6:147–154
Konthur Z, Hust M, Dübel S (2005) Perspectives for systematic in vitro antibody generation. Gene 364:19–29
Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685
Lartigue C, Glass JI, Alperovich N, Pieper R, Parmar PP, Hutchison CA, Smith HO, Venter JC (2007) Genome transplantation in bacteria: changing one species to another. Science 317:632–638
Maas A, Meens J, Baltes N, Hennig-Pauka I, Gerlach G (2006) Development of a DIVA subunit vaccine against Actinobacillus pleuropneumoniae infection. Vaccine 24:7226–7237
Madsen ML, Puttamreddy S, Thacker EL, Carruthers MD, Minion FC (2008) Transcriptome changes in Mycoplasma hyopneumoniae during infection. Infect Immun 76:658–663
Margulies M et al (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437:376–380
McCafferty J, Griffiths AD, Winter G, Chiswell DJ (1990) Phage antibodies: filamentous phage displaying antibody variable domains. Nature 348:552–554
Meens J, Selke M, Gerlach G (2006) Identification and immunological characterization of conserved Mycoplasma hyopneumoniae lipoproteins Mhp378 and Mhp651. Vet Microbiol 116:85–95
Minion FC, Adams C, Hsu T (2000) R1 region of P97 mediates adherence of Mycoplasma hyopneumoniae to swine cilia. Infect Immun 68:3056–3060
Minion FC, Lefkowitz EJ, Madsen ML, Cleary BJ, Swartzell SM, Mahairas GG (2004) The genome sequence of Mycoplasma hyopneumoniae strain 232, the agent of swine mycoplasmosis. J Bacteriol 186:7123–7133
Nilsson M, Bjerketorp J, Wiebensjö A, Ljungh A, Frykberg L, Guss B (2004) A von Willebrand factor-binding protein from Staphylococcus lugdunensis. FEMS Microbiol Lett 234:155–161
Paschke M, Höhne W (2005) A twin-arginine translocation (Tat)-mediated phage display system. Gene 350:79–88
Rhyner C, Weichel M, Flückiger S, Hemmann S, Kleber-Janke T, Crameri R (2004) Cloning allergens via phage display. Methods 32:212–218
Rondot S, Koch J, Breitling F, Dübel S (2001) A helper phage to improve single-chain antibody presentation in phage display. Nat Biotechnol 19:75–78
Sambrook J, Russell D (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory, New York
Sellman BR, Howell AP, Kelly-Boyd C, Baker SM (2005) Identification of immunogenic and serum binding proteins of Staphylococcus epidermidis. Infect Immun 73:6591–600
Sidhu SS, Koide S (2007) Phage display for engineering and analyzing protein interaction interfaces. Curr Opin Struct Biol 17:481–487
Sirand-Pugnet P, Citti C, Barré A, Blanchard A (2007a) Evolution of mollicutes: down a bumpy road with twists and turns. Res Microbiol 158:754–766
Sirand-Pugnet P et al (2007b) Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome. PLoS Genet 3:e75
Smith GP (1985) Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface. Science 228:1315–1317
Soltes G, Hust M, Ng KKY, Bansal A, Field J, Stewart DIH, Dübel S, Cha S, Wiersma EJ (2007) On the influence of vector design on antibody phage display. J Biotechnol 127:626–637
Strasser M, Frey J, Bestetti G, Kobisch M, Nicolet J (1991) Cloning and expression of a species-specific early immunogenic 36-kilodalton protein of Mycoplasma hyopneumoniae in Escherichia coli. Infect Immun 59:1217–1222
Taussig MJ et al (2007) ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome. Nat Methods 4:13–17
Valent QA (2001) Signal recognition particle mediated protein targeting in Escherichia coli. Antonie Van Leeuwenhoek 79:17–31
Vasconcelos ATR et al (2005) Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae. J Bacteriol 187:5568–5577
Yang E, Shim JS, Woo H, Kim K, Kwon HJ (2007) Aminopeptidase N/CD13 induces angiogenesis through interaction with a pro-angiogenic protein, galectin-3. Biochem Biophys Res Commun 363:336–341
Zacchi P, Sblattero D, Florian F, Marzari R, Bradbury ARM (2003) Selecting open reading frames from DNA. Genome Res 13:980–990
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We would like to thank Stefan Dübel for corrections and discussion on the manuscript and Saskia Helmsing for technical assistance.
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Kügler, J., Nieswandt, S., Gerlach, G.F. et al. Identification of immunogenic polypeptides from a Mycoplasma hyopneumoniae genome library by phage display. Appl Microbiol Biotechnol 80, 447–458 (2008). https://doi.org/10.1007/s00253-008-1576-1
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DOI: https://doi.org/10.1007/s00253-008-1576-1