Abstract
The bc1 complex (complex III) of Saccharomyces cerevisae is composed of ten subunits that are assembled in the inner mitochondrial membrane. Cbp3p and Cbp4p are two mitochondrial proteins which are postulated to act as chaperones in bc1 complex formation. Here, we show by blue native PAGE that cbp3Δ and cbp4Δ mutants are disturbed in complex III assembly and accumulate intermediate-sized forms of the complex. Moreover, deletion of CBP3 interferes with the formation of complex III/IV supracomplexes. Our studies show that Cbp3p and Cbp4p interact and are present in high-molecular-weight complexes, some of which might represent intermediates of complex III assembly. Overexpression of Cbp4p cannot substitute for the function of Cbp3p, but high-level expression of Cbp3p can partially compensate for the lack of Cbp4p. The finding that mitochondria of cbp3Δ and cbp4Δ mutants exhibit a wild-type lipid composition favors the idea that Cbp3p and Cbp4p are specific assembly factors for complex III rather than components of the mitochondrial lipid metabolism.
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Barrientos A, Barros MH, Valnot I, Rotig A, Rustin P, Tzagoloff A (2002) Cytochrome oxidase in health and disease. Gene 286:53–63
Berden JA, Schoppink PJ, Grivell LA (1988) A model for the assembly of ubiquinol:cytochrome c oxidoreductase in yeast. In: Palmieri F, Quagliariello E (eds) Molecular basis of biomembrane transport. Elsevier, Amsterdam, pp 195–208
Bligh EG, Dyer WJ (1959) A rapid method of total lipid extraction and purification. Can J Med Sci 37:911–917
Crivellone MD (1994) Characterization of CBP4, a new gene essential for the expession of ubiquinol cytochrome c reductase in Saccharomyces cerevisiae. J Biol Chem 269:21284–21292
Crivellone MD, Wu MA, Tzagoloff A (1988) Assembly of the mitochondrial membrane system. Analysis of structural mutants of the yeast coenzyme QH2-cytochrome c reductase complex. J Biol Chem 263:14323–14333
Cruciat CM, Brunner S, Baumann F, Neupert W, Stuart RA (2000) The cytochrome bc1 and cytochrome c oxidase complexes associate to form a single supracomplex in yeast mitochondria. J Biol Chem 275:18093–18098
Cruciat CM, Hell K, Folsch H, Neupert W, Stuart RA (1999) Bcs1p, an AAA-family member, is a chaperone for the assembly of the cytochrome bc(1) complex. EMBO J 18:5226–5233
Daum G, Böhni PC, Schatz G (1982) Import of proteins into mitochondria. Cytochrome b2 and cytochrome c peroxidase are located in the intermembrane space of yeast mitochondria. J Biol Chem 257:13028–13033
Vries S de, Marres CAM (1987) The mitochondrial respiratory chain of yeast. Structure and biosynthesis and the role in cellular metabolism. Biochim Biophys Acta 895:205–239
Dowhan W (1997) Molecular basis for membrane phospholipid diversity: why are there so many lipids? Annu Rev Biochem 66:199–232
Ellis RJ, Vries SM van der (1991) Molecular chaperones. Annu Rev Biochem 60:321–347
Gomez B Jr, Robinson NC (1999) Phospholipase digestion of bound cardiolipin reversibly inactivates bovine cytochrome bc1. Biochemistry 38:9031–9038
Gu Z, Valianpour F, Chen S, Vaz FM, Hakkaart GA, Wanders RJA, Greenberg ML (2004) Aberrant cardiolipin metabolism in the yeast taz1 mutant: a model for Barth syndrome. Mol Microbiol 51:149–158
Kaiser C, Michaelis S, Mitchell A (1994) Methods in yeast genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
Katan MB, Pool L, Groot GS (1976) The cytochrome bc1 complex of yeast mitochondria. Isolation and partial characterization of the cytochrome bc1 complex and cytochrome b. Eur J Biochem 65:95–105
Knop M, Siegers K, Pereira G, Zachariae W, Winsor B, Nasmyth K, Schiebel E (1999) Epitope tagging of yeast genes using a PCR-based strategy: more tags and improved practical routines. Yeast 15:963–972
Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685
Lange C, Hunte C. (2002) Crystal structure of the yeast cytochrome bc1 complex with its bound substrate cytochrome c. Proc Natl Acad Sci USA 99:2800–2805
Lange C, Nett JH, Trumpower BL, Hunte C (2001) Specific roles of protein–phospholipid interactions in the yeast cytochrome bc1 complex structure. EMBO J 20:6591–600
Lee SY, Hunte C, Malaney S, Robinson BH (2001) The N-terminus of the Qcr7 protein of the cytochrome bc1 complex in S. cerevisiae may be involved in facilitating stability of the subcomplex with the Qcr8 protein and cytochrome b. Arch Biochem Biophys 393:215–221
Lode A, Kuschel M, Paret C, Rodel G. (2000) Mitochondrial copper metabolism in yeast: interaction between Sco1p and Cox2p. FEBS Lett 485:19–24
Meisinger C, Sommer T, Pfanner N (2000) Purification of Saccharomcyes cerevisiae mitochondria devoid of microsomal and cytosolic contaminations. Anal Biochem 287:339–342
Mumberg D, Müller R, Funk M (1995) Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds. Gene 156:119–122
Nijtmans LG, Henderson NS, Holt IJ (2002) Blue native electrophoresis to study mitochondrial and other protein complexes. Methods 26:327–34
Nobrega FG, Nobrega MP, Tzagoloff A (1992) BCS1, a novel gene required for the expession of functional Rieske iron-sulphur protein in Saccharomyces cerevisiae. EMBO J 11:3821–3829
Pel HJ, Tzagoloff A, Grivell LA (1992) The identification of 18 nuclear genes required for the expression of the yeast mitochondrial gene encoding cytochrome c oxidase subunit 1. Curr Genet 21:139–146
Rödel G (1997) Translational activator proteins required for cytochrome b synthesis in Saccharomyces cerevisiae. Curr Genet 3:375–379
Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
Saraste M (1999) Oxidative phosphorylation at the fin de siècle. Science 283:1488–1493
Schägger H (2001) Blue-native gels to isolate protein complexes from mitochondria. Methods Cell Biol 65:231–244
Schägger H (2002) Respiratory chain supercomplexes of mitochondria and bacteria. Biochim Biophys Acta 1555:154–159
Schägger H, Hagen T, Roth B, Brandt U, Link TA, Jagow G von (1990) Phospholipid specificity of bovine heart bc1 complex. Eur J Biochem 190:123–130
Schägger H, Pfeiffer K (2000) Supercomplexes in the respiratory chains of yeast and mammalian mitochondria. EMBO J 19:1777–1783
Schiestl RH, Gietz RD (1989) High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier. Curr Genet 16:339–346
Schmitt ME, Trumpower BL (1990) Subunit 6 regulates half-of-the-sites reactivity of the dimeric cytochrome bc1 complex in Saccharomcyes cerevisiae. J Biol Chem 265:17005–17011
Shi G, Crivellone MD, Edderkaoui B (2001) Identification of functional regions of Cbp3p, an enzyme specific chaperone required for the assembly of ubiquinol-cytochrome c reductase in yeast mitochondria. Biochim Biophys Acta 1506:103–116
Tzagoloff A, Nobrega M, Gorman N, Sinclair P (1993) On the functions of the yeast COX 10 and COX 11 gene products. Biochem Mol Biol Int 31:593–598
Wu M and Tzagoloff A (1989) Identification and characterization of a new gene (CBP3) required for the expression of yeast coenzyme QH2 -cytochrome c reductase. J Biol Chem 264:11122–30
Zara V, Palmisano I, Conte L, Trumpower BL (2004) Further insights into the assembly of the yeast cytochrome bc1 complex based on analysis of single and double deletion mutants lacking supernumerary subunits and cytochrome b. Eur J Biochem 271:1209–1218
Zhang M, Mileykovskaya E, Dowhan W (2002) Gluing the respiratory chain together. Cardiolipin is required for supercomplex formation in the inner mitochondrial membrane. J Biol Chem 277:43553–43556
Zhong Q, Gohil VM, Ma L, Greenberg ML (2004) Absence of cardiolipin results in temperature sensitivity, respiratory defects, and mitochondrial DNA instability independent of pet56. J Biol Chem 279:32294–32300
Acknowledgements
We thank U. Krause-Buchholz for helpful discussion and useful comments on the BN-PAGE experiments and Ch. Thiele (Max Planck Institute for Molecular Cell Biology and Genetics, Dresden) for providing us with materials for lipid analysis.
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Kronekova, Z., Rödel, G. Organization of assembly factors Cbp3p and Cbp4p and their effect on bc1 complex assembly in Saccharomyces cerevisiae. Curr Genet 47, 203–212 (2005). https://doi.org/10.1007/s00294-005-0561-9
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DOI: https://doi.org/10.1007/s00294-005-0561-9