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Comprehensive analysis of microRNA expression patterns in renal biopsies of lupus nephritis patients

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Abstract

MicroRNAs (miRNAs) are noncoding RNA molecules of 21–24 nt that regulate the expression of target genes in a post-transcriptional manner. Evidence indicates that miRNAs play essential roles in embryogenesis, cell differentiation, and pathogenesis of human diseases. This study describes a comparison between the miRNA profile of kidney biopsies from lupus nephritis (LN) patients and the controls, to develop further understanding of the pathogenesis of LN. Kidney biopsies were taken from five LN patients detected LN Class II and three normal controls. The miRNA microarray chip analysis identified 66 miRNAs differentially expressed in LN. The chip results were confirmed by QRT-PCR. This work indicates that miRNAs are potential diagnosis biomarkers and probable factors involved in the pathogenesis of LN.

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References

  1. Wallace DJ, Hahn BH (1997) Dubois’ Lupus Erythematosus. Williams & Wilkins, Baltimore

    Google Scholar 

  2. Nossent JC, Bronsveld W, Swaak AJ (1989) Systemic lupus erythematosus. III. Observations on clinical renal involvement and follow up of renal function: Dutch experience with 110 patients studied prospectively. Ann Rheum Dis 48:810–816. doi:10.1136/ard.48.10.810

    Article  PubMed  CAS  Google Scholar 

  3. Bernatsky S, Boivin JF, Joseph L et al (2006) Mortality in systemic lupus erythematosus. Arthritis Rheum 54:2550–2557. doi:10.1002/art.21955

    Article  PubMed  CAS  Google Scholar 

  4. Meister G, Tuschl T (2004) Mechanisms of gene silencing by double-stranded RNA. Nature 431:343–349. doi:10.1038/nature02873

    Article  PubMed  CAS  Google Scholar 

  5. Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism and function. Cell 116:281–297. doi:10.1016/S0092-8674(04)00045-5

    Article  PubMed  CAS  Google Scholar 

  6. Abbott AL, Alvarez-Saavedra E, Miska EA et al (2005) The let-7 MicroRNA family members mir-48, mir-84, and mir-241 function together to regulate developmental timing in Caenorhabditis elegans. Dev Cell 9:403–414. doi:10.1016/j.devcel.2005.07.009

    Article  PubMed  CAS  Google Scholar 

  7. Lee RC, Feinbaum RL, Ambros V (1993) The C. elegans heterochronic gene lin-4 encodes small-RNAs with antisense complementarity to lin-14. Cell 75:843–854. doi:10.1016/0092-8674(93)90529-Y

    Article  PubMed  CAS  Google Scholar 

  8. Bernstein E, Kim SY, Carmell MA et al (2003) Dicer is essential for mouse development. Nat Genet 35:215–217. doi:10.1038/ng1253

    Article  PubMed  CAS  Google Scholar 

  9. Chen CZ, Li L, Lodish HF, Bartel DP (2004) MicroRNAs modulate hematopoietic lineage differentiation. Science 303:83–86. doi:10.1126/science.1091903

    Article  PubMed  CAS  Google Scholar 

  10. Lu J, Getz G, Miska EA et al (2005) MicroRNA expression profiles classify human cancers. Nature 435:834–838. doi:10.1038/nature03702

    Article  PubMed  CAS  Google Scholar 

  11. Calin GA, Ferracin M, Cimmino A et al (2005) A MicroRNA signature associated with prognosis and progression in chronic lymphocytic leukemia. N Engl J Med 353:1793–1801. doi:10.1056/NEJMoa050995

    Article  PubMed  CAS  Google Scholar 

  12. Johnson SM, Grosshans H, Shingara J et al (2005) RAS is regulated by the let-7 microRNA family. Cell 120:635–647. doi:10.1016/j.cell.2005.01.014

    Article  PubMed  CAS  Google Scholar 

  13. Calin GA, Sevignani C, Dumitru CD et al (2004) Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers. Proc Natl Acad Sci USA 101:2999–3004. doi:10.1073/pnas.0307323101

    Article  PubMed  CAS  Google Scholar 

  14. Jin P, Alisch RS, Warren ST (2004) RNA and microRNAs in fragile X mental retardation. Nat Cell Biol 6:1048–1053. doi:10.1038/ncb1104-1048

    Article  PubMed  CAS  Google Scholar 

  15. Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B (2002) miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs. Genes Dev 16:720–728. doi:10.1101/gad.974702

    Article  PubMed  CAS  Google Scholar 

  16. Landthaler M, Yalcin A, Tuschl T (2004) The human DiGeorge syndrome critical region gene 8 and Its D. melanogaster homolog are required for miRNA biogenesis. Curr Biol 14:2162–2167. doi:10.1016/j.cub.2004.11.001

    Article  PubMed  CAS  Google Scholar 

  17. Gregory RI, Yan KP, Amuthan G et al (2004) The microprocessor complex mediates the genesis of microRNAs. Nature 432:235–240. doi:10.1038/nature03120

    Article  PubMed  CAS  Google Scholar 

  18. Poy MN, Eliasson L, Krutzfeldt J et al (2004) A pancreatic islet-specific microRNA regulates insulin secretion. Nature 432:226–230. doi:10.1038/nature03076

    Article  PubMed  CAS  Google Scholar 

  19. Dai Y, Huang YS, Tang M, Lv TY, Hu CX, Tan YH, Xu ZM, Yin YB (2007) Microarray analysis of microRNA expression in peripheral blood cells of systemic lupus erythematosus patients. Lupus 16(12):939–946. doi:10.1177/0961203307084158

    Article  PubMed  CAS  Google Scholar 

  20. Weening JJ, D’Agati VD, Schwartz MM et al (2004) Classification of glomerulonephritis in systemic lupus erythematosus revisited. Kidney Int 65:521–530. doi:10.1111/j.1523-1755.2004.00443.x

    Article  PubMed  Google Scholar 

  21. Rovin BH, Birmingham DJ, Nagaraja HN, Yu CY, Hebert LA (2007) Biomarker discovery in human SLE nephritis. Bull NYU Hosp Jt Dis 65(3):187–193

    PubMed  Google Scholar 

  22. Fukao T, Fukuda Y, Kiga K, Sharif J, Hino K, Enomoto Y, Kawamura A, Nakamura K, Takeuchi T, Tanabe M (2007) An evolutionarily conserved mechanism for microRNA-223 expression revealed by microRNA gene profiling. Cell 129(3):617–631. doi:10.1016/j.cell.2007.02.048

    Article  PubMed  CAS  Google Scholar 

  23. Gottardo F, Liu CG, Ferracin M, Calin GA, Fassan M, Bassi P, Sevignani C, Byrne D, Negrini M, Pagano F, Gomella LG, Croce CM, Baffa R (2007) Micro-RNA profiling in kidney and bladder cancers. Urol Oncol 25(5):387–392. doi:10.1016/j.urolonc.2007.01.019

    PubMed  CAS  Google Scholar 

  24. Rajewsky N (2006) microRNA target predictions in animals. Nat Genet 38(suppl):S8–S13. doi:10.1038/ng1798

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

The authors thank the patients with LN and renal tumor who participated in this study.

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Correspondence to YuanShuai Huang.

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Dai, Y., Sui, W., Lan, H. et al. Comprehensive analysis of microRNA expression patterns in renal biopsies of lupus nephritis patients. Rheumatol Int 29, 749–754 (2009). https://doi.org/10.1007/s00296-008-0758-6

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  • DOI: https://doi.org/10.1007/s00296-008-0758-6

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