Abstract
Xiangzamian 2 (XZM2) was the most widely cultivated cotton hybrid planted as F1 hybrids and as selfed F2 seeds in China before the release of transgenic Bt hybrids. By crossing two parents of XZM2, Gossypium hirsutum cv. Zhongmiansuo12 (ZMS12) and G. hirsutum acc. 8891, and through subsequent selfings, we obtained F8 and F9 populations of 180 recombinant inbred lines (RILs). A RIL population was cultivated in two cotton-growing regions in China for 2 years. The purpose of the present research was to detect quantitative trait loci (QTL) for fiber quality and provide information applicable to cotton breeding. A genetic map was constructed mainly using SSR markers. QTL controlling fiber quality traits were determined at the single-locus and two-locus levels, and genotype-by-environment interactions were analyzed. Among the main-effect QTL, a fiber length QTL qFL-D2-1 and a reflectance QTL qFR-D2-1 were simultaneously detected at two growing regions in 2 years, which suggested a high degree of stability in different environments, and might be of particular value for a marker-assisted selection (MAS) program. The results suggested that epistatic effects, as well as additive effects, of QTL play important roles in fiber quality in these RILs. In our research, the phenomenon of QTL clusters was detected in the cotton genome.
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Abbreviations
- AFLP:
-
Amplified fragment length polymorphism
- EST:
-
Expression sequence tag
- QTL:
-
Quantitative trait locus/loci
- RAPD:
-
Random amplified polymorphic DNA
- RIL:
-
Recombinant inbred line
- SRAP:
-
Sequence-related amplified polymorphism
- SSR:
-
Simple sequence repeats
References
Baker JL, Verhalen LM (1975) Heterosis and combining ability for several agronomic and fiber properties among selected lines of upland cotton. Cotton Grow Rev 52:209–223
Basten CJ, Weir BS, Zeng ZB (2001) QTL Cartographer, version 1.15. Department of Statistics, North Carolina State University, Raleigh, NC
Chalhoub BA, Thibault S, Laucou V, Rameau C, Höfte H, Cousin R (1997) Silver staining and recovery of AFLP amplification products on large denaturing polyacrylamide gels. Biotechniques 22:216–220
Cheverud JM, Rountman EJ (1995) Epistasis and its contribution to genetic variance components. Genetics 139:1455–1461
Han ZG, Wang CB, Song XL, Guo WZ, Gou JY, Li CH, Chen XY, Zhang TZ (2006) Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton. Theor Appl Genet 112:430–439
Iqbal MJ, Reddy OUK, El-Zik KM, Pepper AE (2001) A genetic bottleneck in the evolution under domestication of upland cotton Gossypium hirsutum L. examined using DNA fingerprinting. Theor Appl Genet 103:547–554
Jiang CX, Wright RJ, El-zik KM, Paterson AH (1998) Polyploid formation created unique avenues for response to selection in Gossypium (cotton). Proc Natl Acad Sci USA 95:4419–4424
Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174–181
Lander ES, Kruglyak L (1995) Genetic dissection of complex traits guidelines for interpreting and reporting linkage results. Nat Genet 11:241–247
Li G, Quiros CF (2001) Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica. Theor Appl Genet 103:455–461
Li YQ, Zeng ZY, Jing L, Yang FQ, Wan YL (1997) Selection and application of Xiangzamian 2. Crop Res 4:27–29 (in Chinese)
Lin YR, Schertz KF, Paterson AH (1995) Comparative analysis of QTL affecting plant height and maturity across the Poaceae, in reference to an interspecific sorghum population. Genetics 141:391–411
Lincoln S, Daly M, Lander E (1992) Constructing genetics maps with MAPMAKER/EXP 3.0. Whitehead Institute Technical Report, Whitehead Institute, Cambridge, MA, USA
McCouch SR, Cho YG, Yano PE, Blinstrub M, Morishima H, Kinoshita T (1997) Report on QTL nomenclature. Rice Genet Newslett 14:11–13
Mei M, Syed NH, Gao S, Thaxton PM, Smith CW, Stelly DM, Chen ZJ (2004) Genetic mapping and QTL analysis of fiber-related traits in cotton (Gossypium). Theor Appl Genet 108:280–291
Meredith WR Jr (1990) Yield and fiber quality potential for second-generation cotton hybrids. Crop Sci 30:1045–1048
Nguyen TB, Giband M, Brottier P, Risterucci AM, Lacape JM (2004) Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theor Appl Genet 109:167–175
Paterson AH, Brubaker CL, Wendel JF (1993) A rapid method for extraction of cotton (Gossypium spp) genomic DNA suitable for RFLP or PCR analysis. Plant Mol Biol Rep 11:122–127
Paterson AH, Saranga Y, Menz M, Jiang CX, Wright RJ (2003) QTL analysis of genotype × environment interactions affecting cotton fiber quality. Theor Appl Genet 106:384–396
Reddy OUK, Pepper AE, Saha S, Jenkins JN, Brooks T, Bolek Y, El-Zik KM (2001) New dinucleotide and trinucleotide microsatellite marker resources for cotton genome research. Cotton Sci 5:103–113
Shappley ZW, Jenkins JN, Zhu J, McCarty JC (1998) Quantitative trait loci associated with agronomic and fiber traits of Upland cotton. J Cotton Sci 4:153–163
Shen XL, Guo WZ, Zhu XF, Yuan YL, Yu JZ, Kohel RJ, Zhang TZ (2005) Molecular mapping of QTLs for fiber qualities in three diverse lines in upland cotton using SSR markers. Mol Breed 15:169–181
Stelly DM (1993) Interfacing cytogenetics with the cotton genome mapping effort. In: Proceedings of the Beltwide Cotton Impvt. Conference, National Cotton Council of America, Memphis, pp 1545–1550
Tang B, Jenkins JN, McCarty JC, Watson CE (1993) F2 hybrids of host plant germplasm and cotton cultivars: II Heterosis and combining ability for fiber properties. Crop Sci 33:706–710
Ulloa M, Meredith WR Jr (2000) Genetic linkage map and QTL analysis of agronomic and fiber quality traits in an intraspecific population. J Cotton Sci 4:161–170
Ulloa M, Saha S, Jenkins JN, Meredith WR Jr, McCarty JC Jr, Stelly DM (2005) Chromosomal assignment of RFLP linkage groups harboring important QTLs on an intraspecific cotton (Gossypium hirsutum L.) joinmap. J Hered 96(2):132–144
Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23(21):4407–4414
Wang DL, Zhu J, Li ZK, Paterson AH (1999a) A computer software for mapping quantitative trait loci QTLs with main effects, epistatic effects and QTL × environment interactions. Copyright by Zhejiang University, Hangzhou, China
Wang DL, Zhu J, Li ZK, Paterson AH (1999b) Mapping QTL with epistatic effects and QTL environment interactions by mixed linear model approaches. Theor Appl Genet 99:1256–1264
Wang K, Song XL, Han ZG, Guo WZ, Yu JZ, Sun J, Pan JJ, Kohel RJ, Zhang TZ (2006) Complete assignment of the chromosomes of Gossypium hirsutum L. by translocation and fluorescence in situ hybridization mapping. Theor Appl Genet [Online first: DOI 10.1007/s00122-006-0273-7]
Wu YT, Yin JM, Guo WZ, Zhu XF, Zhang TZ (2004) Heterosis performance of yield and fiber quality in F1 and F2 hybrids in upland cotton. Plant Breed 123:285–289
Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136:1457–1468
Zhang J, Wu YT, Guo WZ, Zhang TZ (2000) Fast screening of SSR markers in cotton with PAGE/silver staining. Cotton Sci Sini 12:267–269 (in Chinese)
Zhang TZ, Pan JJ (1999) Hybrid seed production in cotton. In: Basra AS (ed) Heterosis and hybrid seed production in agronomic crops. Food products press, an Imprint of the Haworth press lnc, New York, pp␣149–184
Zhang TZ, Yuan YL, Yu JZ, Guo WZ, Kohel RJ (2003) Molecular tagging of a major QTL for fiber strength in Upland cotton and its marker-assisted selection. Theor Appl Genet 106:262–268
Zhang ZS, Xiao YH, Luo M, Li XB, Luo XY, Hou L, Li DM, Pei Y (2005) Construction of a genetic linkage map and QTL analysis of fiber-related traits in upland cotton (Gossypium hirsutum L.). Euphytica 144:91–99
Acknowledgments
This work was supported by the grants␣from The National Natural Foundation for Outstanding␣Youth (30025029), High-tech program 863 (2002AA207006), The Changjiang Scholars and Innovative Research Team in University and The Teaching and Research Award Program for Outstanding Young Teachers in Higher Education Institutions of MOE, China. The authors show gratitude to Prof. Dr. Jun Zhu in Zhejiang University and Mr. XH He in NAU for their assistance in data analysis.
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Wang, B., Guo, W., Zhu, X. et al. QTL mapping of fiber quality in an elite hybrid derived-RIL population of upland cotton. Euphytica 152, 367–378 (2006). https://doi.org/10.1007/s10681-006-9224-2
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DOI: https://doi.org/10.1007/s10681-006-9224-2