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The complete genome sequence for a Turkish isolate of Wheat dwarf virus (WDV) from barley confirms the presence of two distinct WDV strains

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Abstract

The complete genome for a barley isolate of Wheat dwarf virus (WDV) from Tekirdağ, Turkey, WDV-Bar[TR], was isolated and sequenced. The genome was found to be 2739 nucleotides long, which is shorter than wheat-infecting WDV isolates, and with a genome organization typical for mastreviruses. The complete genome of WDV-Bar[TR] showed 83–84% nucleotide identity to wheat isolates of WDV, with the non-coding regions SIR and LIR least conserved (72–74% identity). The deduced amino acid sequences for Rep and RepA were most conserved (92–93%), while CP and MP were less conserved (87% and 79–80%, respectively). The identity to other mastrevirus species was significantly lower. In phylogenetic analyses, the WDV isolates formed a distinct clade, well separated from the other mastreviruses with the wheat isolates grouping closely together. Phylogenetic analyses of WDV-Bar[TR], the partial sequence for another Turkish barley isolate (WDV-Bar[TR2]) and published WDV sequences further supported the division of WDV into two distinct strains. The barley strain could also be divided into three subtypes based on relationships and geographic origin. This study shows the first complete published sequence for a barley isolate of WDV.

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Acknowledgements

This study was supported by TUBITAK, Carl Tryggers stiftelse and IMOP postgraduate research school. Special thanks to Roland Sigvald and Annhild Andersson for help with ELISA.

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Authors and Affiliations

  1. Department of Plant Protection, Trakya University, Tekirdağ Faculty of Agriculture, 59030, Tekirdağ, Turkey

    Gassan Köklü

  2. Department of Plant Biology and Forest Genetics, Swedish University of Agricultural Sciences (SLU), P.O. Box 7080, SE-75007, Uppsala, Sweden

    Jon N. E. Ramsell & Anders Kvarnheden

Authors
  1. Gassan Köklü
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  2. Jon N. E. Ramsell
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  3. Anders Kvarnheden
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Corresponding author

Correspondence to Anders Kvarnheden.

Additional information

The nucleotide sequence data reported appear in the EMBL, GenBank and DDBJ Nucleotide Sequence Databases under the accession numbers AJ783960 and AJ811960.

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Köklü, G., Ramsell, J.N.E. & Kvarnheden, A. The complete genome sequence for a Turkish isolate of Wheat dwarf virus (WDV) from barley confirms the presence of two distinct WDV strains. Virus Genes 34, 359–366 (2007). https://doi.org/10.1007/s11262-006-0029-0

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