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Mathematical Modelling of the Aux/IAA Negative Feedback Loop

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Abstract

The hormone auxin is implicated in regulating a diverse range of developmental processes in plants. Auxin acts in part by inducing the Aux/IAA genes. The associated pathway comprises multiple negative feedback loops (whereby Aux/IAA proteins can repress Aux/IAA genes) that are disrupted by auxin mediating the turnover of Aux/IAA protein. In this paper, we develop a mathematical model of a single Aux/IAA negative feedback loop in a population of identical cells. The model has a single steady-state. We explore parameter space to uncover a number of dynamical regimes. In particular, we identify the ratio between the Aux/IAA protein and mRNA turnover rates as a key parameter in the model. When this ratio is sufficiently small, the system can evolve to a stable limit cycle, corresponding to an oscillation in Aux/IAA expression levels. Otherwise, the steady-state is either a stable-node or a stable-spiral. These observations may shed light on recent experimental results.

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References

  • Abel, S., Theologis, A., 1996. Early genes and auxin action. Plant Physiol. 111, 9–17.

    Article  Google Scholar 

  • Abel, S., Oeller, P.W., Theologis, A., 1994. Early auxin-induced genes encode short-lived nuclear proteins. Proc. Natl. Acad. Sci. USA 91, 326–330.

    Article  Google Scholar 

  • Abel, S., Nguyen, M.D., Theologis, A., 1995. The PS-IAA4/5-like family of early auxin-inducible mRNAs in Arabidopsis thaliana. J. Mol. Biol. 251, 533–549.

    Article  Google Scholar 

  • Benjamins, R., Scheres, B., 2008. Auxin: the looping star in plant development. Ann. Rev. Plant Biol. 59, 443.

    Article  Google Scholar 

  • De Smet, I., Tetsumura, T., De Rybel, B., Frey, N.F., Laplaze, L., Casimiro, I., Swarup, R., Naudts, M., Vanneste, S., Audenaert, D., et al., 2007. Auxin-dependent regulation of lateral root positioning in the basal meristem of Arabidopsis. Development 134(4), 681.

    Article  Google Scholar 

  • Dharmasisi, S., Estelle, M., 2002. The role of regulated protein degradation in auxin response. Plant Mol. Biol. 49, 401–409.

    Article  Google Scholar 

  • Dharmasiri, N., Dharmasiri, S., Estelle, M., 2005. The F-box protein TIR1 is an auxin receptor. Nature 435, 441–445.

    Article  Google Scholar 

  • Dreher, K.A., Brown, J., Saw, R.E., Callis, J., 2006. The Arabidopsis Aux/IAA protein family has diversified in degradation and auxin responsiveness. Plant Cell 18(3), 699–714.

    Article  Google Scholar 

  • Elf, J., Li, G.W., Xie, X.S., 2007. Probing transcription factor dynamics at the single-molecule level in a living cell. Science 316(5828), 1191.

    Article  Google Scholar 

  • Ermentrout, B., 2002. Simulating, Analyzing, and Animating Dynamical Systems: A Guide to XPPAUT for Researchers and Students. SIAM, Philadelphia.

    MATH  Google Scholar 

  • Gray, W.M., Kepinski, S., Rouse, D., Leyser, O., Estelle, M., 2001. Auxin regulates SCF(TIR1)-dependent degradation of AUX/IAA proteins. Nature 414, 271.

    Article  Google Scholar 

  • Guilfoyle, T., Hagen, G., Ulmasov, T., Murfett, J., 1998. How does auxin turn on genes? Plant Physiol. 118, 341–347.

    Article  Google Scholar 

  • Hagen, G., Guilfoyle, T., 2002. Auxin-responsive gene expression: genes, promoters and regulatory factors. Plant Mol. Biol. 49, 373–385.

    Article  Google Scholar 

  • Kepinski, S., Leyser, O., 2005. The arabidopsis f-box protein tir1 is an auxin receptor. Nature 435, 436–437.

    Article  Google Scholar 

  • Koshiba, T., Ballas, N., Wong, L.M., Theologis, A., 1995. Transcriptional regulation of PS-IAA4/5 and PS-IAA6 early gene expression by indoleacetic acid and protein synthesis inhibitors in pea (Pisum sativum). J. Mol. Biol. 253, 396–413.

    Article  Google Scholar 

  • Leyser, O., 2002. Molecular genetics of auxin signaling. Ann. Rev. Plant Biol. 53(1), 377–398.

    Article  Google Scholar 

  • Narsai, R., Howell, K.A., Millar, A.H., O’Toole, N., Small, I., Whelan, J., 2007. Genome-wide analysis of mrna decay rates and their determinants in arabidopsis thaliana. The Plant Cell Online.

  • Oeller, P.W., Theologis, A., 1995. Induction kinetics of the nuclear proteins encoded by the early indoleacetic acid-inducible genes, PS-IAA4/5 and PS-IAA6, in pea (Pisum sativum L.). Plant J. 7, 37–48.

    Article  Google Scholar 

  • Ouellet, F., Overvoorde, P.J., Theologis, A., 2001. IAA17/AXR3: Biochemical insight into an Auxin mutant phenotype. Plant Cell 13, 829–841.

    Article  Google Scholar 

  • Ruegger, M., Dewey, E., Gray, W.M., Hobbie, L., Turner, J., Estelle, M., 1998. The TIR1 protein of Arabidopsis functions in auxin response and is related to human SKP2 and yeast grr1p. Genes Dev. 12, 198–207.

    Article  Google Scholar 

  • Teale, W.D., Paponov, I.A., Palme, K., 2006. Auxin in action: signalling, transport and the control of plant growth and development. Nat. Rev. Mol. Cell Biol. 7, 847–859.

    Article  Google Scholar 

  • Tiwari, S.B., Hagan, G., Guilfoyle, T., 2003. The roles of Auxin response factor domains in Auxin-responsive transcription. Plant Cell 15, 533–543.

    Article  Google Scholar 

  • Ulmasov, T., Hagen, G., Guilfoyle, T.J., 1999. Dimerization and DNA binding of auxin response factors. Plant J. 19, 309–319.

    Article  Google Scholar 

  • Zenser, N., Ellsmore, A., Leasure, C., Callis, J., 2001. Auxin modulates the degradation rate of Aux/IAA proteins. Proc. Natl. Acad. Sci. USA 98, 11795–117800.

    Article  Google Scholar 

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Correspondence to A. M. Middleton.

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Middleton, A.M., King, J.R., Bennett, M.J. et al. Mathematical Modelling of the Aux/IAA Negative Feedback Loop. Bull. Math. Biol. 72, 1383–1407 (2010). https://doi.org/10.1007/s11538-009-9497-4

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  • DOI: https://doi.org/10.1007/s11538-009-9497-4

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