Reconstructing ancestral character states under Wagner parsimony
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2022, STAR ProtocolsCitation Excerpt :If one does not want any constraint, one then uses unordered Fitch setting (Fitch, 1971) which permits any state of a character to transform directly to any other state. If one wants to impose a constraint as to the direction (polarity) of the state changes, one uses Wagner ordered setting (Farris, 1970; Swofford and Maddison, 1987) which is bidirectional, i.e., in a three states 0,1,2 character there is no requirement that 0 be the ancestral state, only the resulting tree will determine which state is ancestral after orienting the tree (graph) with an outgroup. Wagner parsimony makes convergence and reversion possible, as in Fitch parsimony.
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