A versatile divide and conquer technique for optimal string alignment
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Engineering a software tool for gene structure prediction in higher organisms
2005, Information and Software TechnologyCitation Excerpt :ii) The main bottleneck of GenomeThreader is still the computation of spliced alignments. We are planning to implement a linear space spliced alignment algorithm utilizing techniques similar to Ref. [16]. Furthermore, we hope to improve the speed of the spliced alignment algorithm by careful code level optimization. (
On the Effects of Substitution Matrix Choices for Pairwise Gapped Global Sequence Alignment of DNA Nucleotides
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2010, Proceedings - 2010 7th International Conference on Fuzzy Systems and Knowledge Discovery, FSKD 2010
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