Elsevier

Computers & Chemistry

Volume 24, Issue 1, January 2000, Pages 105-123
Computers & Chemistry

Origin of life on earth and Shannon's theory of communication

https://doi.org/10.1016/S0097-8485(00)80010-8Get rights and content

Abstract

The genetic information system is segregated, linear and digital. It is astonishing that the technology of information theory and coding theory has been in place in biology for at least 3.850 billion years (Mojzsis, S.J., Kishnamurthy, Arrhenius, G., 1998. Before RNA and after: geological and geochemical constraints on molecular evolution 1–47. In: Gesteland, R.F. (Ed.), The RNA World: The Nature of Modern RNA Suggests a Prebiotic RNA, second ed. Cold Spring Harbor Laboratory Press, Boca Raton, FL). The genetic code performs a mapping between the sequences of the four nucleotides in mRNA to the sequences of the 20 amino acids in protein. It is highly relevant to the origin of life that the genetic code is constructed to confront and solve the problems of communication and recording by the same principles found both in the genetic information system and in modern computer and communication codes. There is nothing in the physico-chemical world that remotely resembles reactions being determined by a sequence and codes between sequences. The existence of a genome and the genetic code divides living organisms from non-living matter. If the historic process of the origin and evolution of life could be followed, it would prove to be a purely chemical process (Wächtershäuser, G., 1997. The origin of life and its methodological challenge. J. Theor. Biol. 187, 483–694). The question is whether this historic process or any reasonable part of it is available to human experiment and reasoning; there is no requirement that Nature's laws be plausible or even known to mankind. Bohr (Bohr, N., 1933. Light and life. Nature 308, 421–423, 456–459) argued that life is consistent with but undecidable by human reasoning from physics and chemistry. Perhaps scientists will come closer and closer to the riddle of how life emerged on Earth, but, like Zeno's Achilles, never achieve a complete solution.

References (99)

  • S.F. Altschul

    Gapped BLAST and PSI-BLAST: a new generation of protein database searc programs

    Nucleic Acid Res.

    (1997)
  • S. Arrhenius
    (1908)
  • O. Baudisch

    ber Nitrat-und Nitritassimilation

    Z. Angew. Chem.

    (1913)
  • P. Billingsley
    (1965)
  • N. Bohr

    Light and life

    Nature

    (1933)
    N. Bohr

    Light and life

    Nature

    (1933)
  • J.M. Bové

    Wall-less prokyrotes of plants

    Annu. Rev. Phytopathol.

    (1984)
  • L. Breiman

    Ann

    Math. Stat.

    (1957)
  • T.R. Cech

    A model for the RNA-catalyzed replication of RNA

    Proc. Natl. Acad. Sci. USA

    (1986)
  • G.J. Chaitin

    An APL2 gallery of mathematical physics — a course outline

  • G.J. Chaitin
    (1987)
  • G.J. Chaitin
    (1998)
  • F.H.C. Crick et al.

    Codes without commas

    Proc. Natl. Acad. Sci. USA

    (1957)
  • F.H.C. Crick

    The origin of the genetic code

    J. Mol. Biol.

    (1968)
  • F.H.C. Crick

    Central Dogma of Molecular Biology

    Nature

    (1970)
  • C.R. Darwin
    (1872)
  • F. Darwin
  • D. Deamer

    The first living systems: a bioenergic perspective

    Microbiol. Mol. Biol. Rev.

    (1997)
  • P.W. Diaconis et al.

    Matchings and phylogenetic trees

    Proc. Natl. Acad. Sci. USA

    (1998)
  • A.W.F. Edwards et al.
  • M. Eigen

    Self-organization of matter and the evolution of biological macromolecules

    Naturwissenschaften

    (1971)
  • M. Eigen
    (1992)
  • M. Eigen et al.

    The hypercycle: a principle of natural self-organization. Part A: emergence of the hypercycle

    Naturwissenschaften

    (1977)
  • F. Engels
    (1954)
  • W. Feller
    (1957)
  • J.C. Fiddes

    The nucleotide sequences of a viral DNA

    Sci. Am.

    (1977)
  • R.A. Fisher
    (1930)
  • S.W. Fox

    Experimantal retracement of the origins of a protocell: it was also a protoneuron

    J. Biol. Phys.

    (1994)
  • S.W. Fox
  • M.H. Freedman

    Limit, logic and computation

    Proc. Natl. Acad. Sci. USA

    (1998)
  • W. Freist

    Accuracy of protein biosynthesis: quasi-species nature of protein and possibility of error catastrophes

    J. Theor. Biol.

    (1998)
  • W. Gilbert

    Nature

    (1986)
  • W. Gilbert

    The exon theory of genes

    Cold Spring Harbor Symp.

    Quant. Biol.

    (1987)
  • W. Gilbert et al.

    Origin of genes

    Proc. Natl. Acad. Sci. USA

    (1997)
  • E.H. Haeckel

    Entstehung der ersten Organismen

  • R.W. Hamming
    (1986)
  • W.C. Hawkes et al.

    In vitro synthesis of glutothione peroxidase from selenite translational incorporation of selenocysteine

    Biochem. Biophys. Acta

    (1983)
  • F. Hoyle et al.
    (1978)
  • M.A. Huynen et al.

    Measuring genome evolution

    Proc. Natl. Acad. Sci. USA

    (1998)
  • H.C.F. Jenkin

    The origin of species

    North Br. Rev.

    (1867)
  • Cited by (50)

    • Defining life and evolution: Essay on the origin, expansion, and evolution of living matter

      2021, BioSystems
      Citation Excerpt :

      In its manifestations, in its implementation, life is expressed in the form of material bodies − organisms. In its essence, it does not come down merely to physics and chemistry [Yockey, 2000; Abel, 2007, 2012; Abel and Trevors, 2006; Johnson, 2011]. Life is not material in the information, as its fundamental basis.

    • Shannon's information, Bernal's biopoiesis and Bernoulli distribution as pillars for building a definition of life

      2019, Journal of Theoretical Biology
      Citation Excerpt :

      By bringing life's foundation to an ability to store information about itself, we are directly connecting it with Shannon's Information Theory (Shannon, 1948). In this meaning, life would be a source of an information that sustains itself (Yockey, 2000). Central Dogma of Molecular Biology will, therefore, be a “noisy channel” in which initial information (DNA) is being coded (source coding) into mRNA (lossless data compression) and subsequently into protein (lossy data compression), in the end, the final product (it might be a transcription factor) acts on the source (DNA) (Schneider, 2010).

    • Space ethics to test directed panspermia

      2014, Life Sciences in Space Research
      Citation Excerpt :

      On one extreme, it is supposed that life emerges obligatorily whenever necessary conditions occur (Wächtershäuser, 1997; de Duve, 2011), and that such conditions might be common in the Universe. On the other extreme, abiogenesis is thought to involve a complex series of accidental events improbable to the extent that it requires recourse to an infinite multiverse (Koonin, 2007), or even considered to be unknowable in principle (Yockey, 2000). In between is the presupposition that abiogenesis can occur comprehensibly in a finite universe, though it involves accidental events or requires rarely occurring set of circumstances, or both, making it a rare phenomenon.

    • Quantum information and the problem of mechanisms of biological evolution

      2014, BioSystems
      Citation Excerpt :

      Thus, the emergence of the first cells that have the molecular machinery and genomes longer than 104 base pairs represents a critical step in the evolution of life. Calculations similar to (1) have been carried out in the literature (see, for example, Haldane, 1957; Gilbert, 1987; Yockey, 2000, 2002). It was shown that an exhaustive search of nucleotides in the genome (amino acids in proteins) took an exponentially large time.

    View all citing articles on Scopus

    Tel.: + 1-410-879-1805.

    View full text