Brief reportEvaluation of pre-screening methods for the identification of HIV-1 superinfection
Section snippets
Acknowledgements
The Amsterdam Cohort Studies on HIV infection and AIDS, a collaboration between the Public Health Service of Amsterdam, the Academic Medical Center of the University of Amsterdam, the Sanquin Blood Supply Foundation, the University Medical Center Utrecht, and the Jan van Goyen Medical Center, are part of the Netherlands HIV Monitoring Foundation and financially supported by the Center for Infectious Disease Control of the Netherlands National Institute for Public Health and the Environment.
References (37)
- et al.
HIV-1 superinfection is not a common event
J. Clin. Virol
(2005) - et al.
Dual HIV-1 infection associated with rapid disease progression
Lancet
(2004) - et al.
HIV-1 superinfection despite broad CD8+ T-cell responses containing replication of the primary virus
Nature
(2002) - et al.
HIV global surveillance: foundation for retroviral discovery and assay development
J. Med. Virol.
(2006) - et al.
Persistence of multidrug-resistant HIV-1 in primary infection leading to superinfection
AIDS
(2004) - et al.
Coinfection and superinfection in patients with long-term, nonprogressive HIV-1 disease
J. Infect. Dis
(2007) - et al.
Evidence for frequent reinfection with human immunodeficiency virus type 1 of a different subtype
J. Virol.
(2005) - et al.
Routine HIV-1 genotyping as a tool to identify dual infections
AIDS
(2007) - et al.
Persistence of multidrug-resistant HIV-1 without antiretroviral treatment 2 years after sexual transmission
Antivir. Ther.
(2004) - et al.
Human immunodeficiency virus type 1 evolution in vivo tracked by DNA heteroduplex mobility assays
J. Virol.
(1994)
Recombination following superinfection by HIV-1
AIDS
Lack of detectable human immunodeficiency virus type 1 superinfection during 1072 person-years of observation
J. Infect. Dis.
HIV-1 superinfection in an HIV-2-infected woman with subsequent control of HIV-1 plasma viremia
Clin. Infect. Dis.
Frequency of HIV-1 dual subtype infections, including intersubtype superinfections, among injection drug users in Bangkok, Thailand
AIDS
Shift in HIV resistance genotype after treatment interruption and short-term antiviral effect following a new salvage regimen
AIDS
Evolution of human immunodeficiency virus type 1 populations after resumption of therapy following treatment interruption and shift in resistance genotype
J. Infect. Dis.
A patient with HIV-1 superinfection
N. Engl. J. Med.
Drug resistance in plasma and breast milk after single-dose nevirapine in subtype C HIV type 1: population and clonal sequence analysis
AIDS Res. Hum. Retroviruses
Cited by (11)
Inferring viral population structures using heteroduplex mobility and DNA sequence analyses
2013, Journal of Virological MethodsCitation Excerpt :HMA has also been used to assess compartmentalization of viruses in different fluids, such as the genital tract (Ping et al., 2000), cerebrospinal fluid (Schnell et al., 2010) and saliva (Freel et al., 2001). Similarly, HMA has been used to detect HIV-1 dual or superinfection (Chen et al., 2012; Diaz et al., 2005; Kraft et al., 2012; Manigart et al., 2004; Powell et al., 2008a,b; Rachinger et al., 2010a) and has been shown to be more sensitive than bulk sequencing to detect superinfection (Rachinger et al., 2010b). Multiple studies have also used HMA to assess changes in the HIV-1 genome during the natural history of infection and during antiviral therapy (Delwart et al., 1994; Doukhan and Delwart, 2001; Dykes et al., 2000; Ince et al., 2009; Kitrinos et al., 2003; Li et al., 1999; Rachinger et al., 2012; Troyer et al., 2005).
Frequency and implications of HIV superinfection
2013, The Lancet Infectious DiseasesCitation Excerpt :Multiregion hybridisation assays can identify only inter-subtype superinfection. Heteroduplex mobility assays, however, can detect samples with greater than 1·5% genetic difference but are susceptible to false positives caused by insertions or deletions.26 Bulk sequencing can be used to examine for changes in the viral population by either searching for new phylogenetic species at a later timepoint or quantifying the amount of degenerate bases in a given sequence.
Triple HIV-1 Infection Is Associated With Faster CD4<sup>+</sup> T-Cell Decline
2020, Frontiers in Microbiology