Review
The use of whole genome amplification in the study of human disease

https://doi.org/10.1016/j.pbiomolbio.2004.01.007Get rights and content
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Abstract

The availability of large amounts of genomic DNA is of critical importance for many of the molecular biology assays used in the analysis of human disease. However, since the amount of patient tissue available is often limited and as particular foci of interest may consist of only a few hundred cells, the yield of DNA is often insufficient for extensive analysis. To address this problem, several whole genome amplification (WGA) methodologies have been developed. Initial WGA approaches were based on the polymerase chain reaction (PCR). However, recent reports have described the use of non-PCR-based linear amplification protocols for WGA. Using these methods, it is possible to generate microgram quantities of DNA starting with as little as 1 mg of genomic DNA. This review will provide an overview of WGA approaches and summarize some of the uses for amplified DNA in various high-throughput genetic applications.

Abbreviations

WGA, whole genome amplification
PCR, polymerase chain reaction
PEP, primer extension preamplification
DOP-PCR, degenerate oligonucleotide primed PCR
LMP, ligation mediated PCR
SDA, strand displacement amplification
TLAD, T7-based linear amplification of DNA
LCM, laser capture microdissection
IRS, interspersed repetitive sequence
LA-PCR, linker adapter technique PCR
LL-DOP-PCR, long products from low DNA quantities DOP-PCR
I-PEP, improved PEP
CGH, comparative genomic hybridization
SNP, single nucleotide polymorphism
SSCP, single stranded conformational polymorphism
RFLP, restriction fragment length polymorphism
EFPE, ethanol-fixed paraffin embedded
FFPE, formalin-fixed paraffin embedded
LOH, loss of heterozygosity
TSG, tumour suppressor genes
SCOMP, single cell comparative genomic hybridization
PRSG, PCR of randomly sheared genomic
MDA, multiple displacement amplification
RCA, rolling circle amplification

Keywords

Whole genome amplification
PEP
DOP-PCR
SCOMP
SDA
TLAD

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