Skip to main content
Log in

A Matrix Associated Region Localizes the Human SOCS-1 Gene to Chromosome 16p13.13

  • Published:
Somatic Cell and Molecular Genetics

Abstract

The MarFinder algorithm was applied to a newly sequenced segment of 16p13.13 abutting the 3′ end of the human PRM1 → PRM2 → TNP2 locus. A candidate region of matrix attached was identified. Subsequent biophysical analysis showed that this region was attached to the somatic nuclear matrix. Nucleotide sequence analysis also revealed the presence of a CpG island. Data base queries showed that this region contained the SOCS-1 gene. Thus, the SOCS-1 gene is bounded by a somatic MAR and is just 3′ of the spermatid-expressed PRM1 → PRM2 → TNP2 domain at position 16p13.13.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

LITERATURE CITED

  1. Jarman, A.P., and Higgs, D.R. (1988). EMBO J. 7:3337–3344.

    Google Scholar 

  2. Gasser, S.M., and Laemmli, U.K. (1986). Cell 46:521–530.

    Google Scholar 

  3. Kalandadze, A.G., Bushara, S.A., Vassetzky, Y.S., and Razin, S.V. (1990). Biochem. Biophys. Res. Commun. 168:9–15.

    Google Scholar 

  4. Dijkwel, P.A., and Hamlin, J.L. (1988). Mol. Cell. Biol. 8:5398–5409.

    Google Scholar 

  5. Forrester, W.C., can Genderen, C., Jenuwein, T., and Grosschedl, R. (1994). Science 265:1221–1225.

    Google Scholar 

  6. Kramer, J.A., and Krawetz, S.A. (1996). J. Biol. Chem. 271:11619–11622.

    Google Scholar 

  7. Kramer, J.A., and Krawetz, S.A. (1995). Mammalian Genome 6:677–679.

    Google Scholar 

  8. Kramer, J.A., Singh, G.B., and Krawetz, S.A. (1996). Genomics 33:305–308.

    Google Scholar 

  9. Singh, G.B., Kramer, J.A., and Krawetz, S.A. (1997). Nucl. Acids Res. 25:1419–1425.

    Google Scholar 

  10. Kramer, J.A., and Krawetz, S.A. (1997). BioTechniques 22(5):880–882.

    Google Scholar 

  11. Starr, R., Willson, T.A., Viney, E.M., Murray, L.J.L., Rayner, J.R., Jenkins, B.J., Gonda, T.J., Alexander, W.S., Metcalf, D., Nicola, N.A., and Hilton, D.J. (1997). Nature 387:917–921.

    Google Scholar 

  12. Naka, T., Narazaki, M., Hirata, M., Matsumoto, T., Minamoto, S., Aono, A., Nishimoto, N., Kajita, T., Taga, T., Yoshizaki, K., Akira, S., and Kishimoto, T. (1997). Nature 387:924–928.

    Google Scholar 

  13. Endo, T.A., Mashuhara, M., Yokouchi, M., Suzuki, R., Sakamoto, H., Mitsui, K., Matsumoto, A., Tanimura, S., Ohtsubo, M., Misawa, H., Miyazaki, T., Leonor, N., Taniguchi, T., Fujita, T., Kanakura, Y., Komiya, S., and Yoshimura, A. (1997). Nature 387:921–924.

    Google Scholar 

  14. Choi, Y.-C., Aizawa, A., and Hecht, N.B. (1997). Mam. Gen. 8:317–323.

    Google Scholar 

  15. Kramer, J.A., McCarrey, J.R., Djakiew, D., and Krawetz, S.A. (1998). Development in press.

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Kramer, J.A., Adams, M.D., Singh, G.B. et al. A Matrix Associated Region Localizes the Human SOCS-1 Gene to Chromosome 16p13.13. Somat Cell Mol Genet 24, 131–133 (1998). https://doi.org/10.1023/B:SCAM.0000007115.58601.87

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/B:SCAM.0000007115.58601.87

Keywords

Navigation