Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Letter
  • Published:

Ice-binding structure and mechanism of an antifreeze protein from winter flounder

Abstract

ANTIFREEZE proteins provide fish with protection against the freezing effect of polar environments by binding to ice surfaces and inhibiting growth of ice crystals. We present the X-ray crystal structure at 1.5 Å resolution of a lone α-helical antifreeze protein from winter flounder, which provides a detailed look at its icebinding features. These consist of four repeated ice-binding motifs, the side chains of which are inherently rigid or restrained by pair-wise side-chain interactions to form a flat binding surface. Elaborate amino- and carboxy-terminal cap structures are also present, which explain the protein's rich α-helical content in solution. We propose an ice-binding model that accounts for the binding specificity of the antifreeze protein along the <011¯2> axes of the {202¯1} ice planes1.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Similar content being viewed by others

References

  1. Knight, C. A., Cheng, C. C. & DeVries, A. L. Biophys. J. 59, 409–418 (1991).

    Article  CAS  Google Scholar 

  2. Chakrabartty, A. & Hew, C. L. Eur. J. Biochem. 202, 1057–1063 (1991).

    Article  CAS  Google Scholar 

  3. Wen, D. & Laursen, R. A. J. biol. Chem. 267, 14102–14108 (1992).

    CAS  PubMed  Google Scholar 

  4. Jorgensen, H. et al. Protein Engng 6, 19–27 (1993).

    Article  CAS  Google Scholar 

  5. Ananthanarayanan, V. A. & Hew, C. L. Biochem. biophys. Res. Commun. 74, 685–689 (1977).

    Article  CAS  Google Scholar 

  6. Chakrabartty, A., Ananthanarayanan, V. A. & Hew, C. L. J. biol. Chem. 264, 11307–11312 (1989).

    CAS  PubMed  Google Scholar 

  7. Richardson, J. S. & Richardson, D. C. Science 240, 1648–1652 (1988).

    Article  ADS  CAS  Google Scholar 

  8. Presta, L. D. & Rose, G. D. Science 240, 1632–1641 (1988).

    Article  ADS  CAS  Google Scholar 

  9. Baker, E. N. & Hubbard, R. E. Progr. Biophys. molec. Biol. 44, 97–179 (1984).

    Article  CAS  Google Scholar 

  10. Hew, C. L. et al. Eur. J. Biochem. 160, 267–272 (1986).

    Article  CAS  Google Scholar 

  11. Piela, L., Nemethy, G. & Scheraga, H. A. Biopolymers 26, 1273–1286 (1987).

    Article  CAS  Google Scholar 

  12. McGregor, M. J., Islam, S. A. & Sternberg, M. J. E. J. molec. Biol. 198, 295–310 (1987).

    Article  CAS  Google Scholar 

  13. Thanki, N., Thornton, J. M. & Goodfellow, J. M. J. molec. Biol. 202, 637–657 (1988).

    Article  CAS  Google Scholar 

  14. Knight, C. A., Driggers, E. & DeVries, A. L. Biophys. J. 64, 252–259 (1993).

    Article  ADS  CAS  Google Scholar 

  15. Wen, D. & Laursen, R. A. Biophys. J. 63, 1659–1662 (1992).

    Article  ADS  CAS  Google Scholar 

  16. Lal, M., Clark, A. H., Lips, A., Ruddock, J. N. & White, D. N. J. Faraday Discuss. 95, 299–306 (1993).

    Article  ADS  CAS  Google Scholar 

  17. Madura, J. D. et al. J. Am. chem. Soc. 116, 417–418 (1994).

    Article  CAS  Google Scholar 

  18. Yang, D. S. C., Chung, Y. J., Chen, P., Rose, J. P. & Hew, C. L. J. molec. Biol. 189, 725 (1986).

    Article  CAS  Google Scholar 

  19. Brunger, T. A., Kuriyan, J. & Karplus, M. Science 235, 458–460 (1987).

    Article  ADS  CAS  Google Scholar 

  20. Fitzgerald, P. M. D. J. appl. Crystallogr. 21, 273–278 (1988).

    Article  CAS  Google Scholar 

  21. Yang, D. S. C., Sax, M., Chakrabartty, A. & Hew, C. L. Nature 333, 232–237 (1988).

    Article  ADS  CAS  Google Scholar 

  22. Hew, C. L., Chakrabartty, A. & Yang, D. S. C. Integration and Control of Metabolic Processes: Pure and Applied Aspects (eds Kon, O. L. et al.) 299–309 (ISCU, Cambridge, 1987).

    Google Scholar 

  23. Jones, T. A., Zou, J. Y., Cowan, S. W. & Kjeldgaard, M. Acta crystallogr. A47, 110–119 (1991).

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Sicheri, F., Yang, D. Ice-binding structure and mechanism of an antifreeze protein from winter flounder. Nature 375, 427–431 (1995). https://doi.org/10.1038/375427a0

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1038/375427a0

This article is cited by

Comments

By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing