Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Technical Report
  • Published:

Site-specific gene targeting in mouse embryonic stem cells with intact bacterial artificial chromosomes

Abstract

Homologous recombination in Escherichia coli simplifies the generation of gene targeting constructs for transduction into mouse embryonic stem (ES) cells1,2,3,4,5,6,7. Taking advantage of the extensive homology provided by intact bacterial artificial chromosomes (BACs), we have developed an efficient method for preparing targeted gene disruptions in ES cells. Correctly integrated clones were identified by a simple screening procedure based on chromosomal fluorescence in situ hybridization (FISH). To date, five mutant lines have been generated and bred to homozygosity by this approach.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1: Generation of Fancg (Xrcc9) knockout construct.
Figure 2: Targeting of ES cells by intact BACs.
Figure 3: Generation of knockout mice.

Similar content being viewed by others

References

  1. Tsuzuki, T. & Rancourt, D.E. Embryonic stem cell gene targeting using bacteriophage lambda vectors generated by phage-plasmid recombination. Nucleic Acids Res. 26, 988–993 (1998).

    Article  CAS  Google Scholar 

  2. Yang, X.W., Model, P. & Heintz, N. Homologous recombination based modification in Escherichia coli and germline transmission in transgenic mice of a bacterial artificial chromosome. Nat. Biotechnol. 15, 859–865 (1997).

    Article  CAS  Google Scholar 

  3. Yu, D. et al. An efficient recombination system for chromosome engineering in Escherichia coli. Proc. Natl. Acad. Sci. USA 97, 5978–5983 (2000).

    Article  CAS  Google Scholar 

  4. Zhang, Y., Buchholz, F., Muyrers, J.P. & Stewart, A.F. A new logic for DNA engineering using recombination in Escherichia coli. Nat. Genet. 20, 123–128 (1998).

    Article  CAS  Google Scholar 

  5. Zhang, P., Li, M.Z. & Elledge, S.J. Towards genetic genome projects: genomic library screening and gene-targeting vector construction in a single step. Nat. Genet. 30, 31–39 (2002).

    Article  Google Scholar 

  6. Murphy, K.C. Use of bacteriophage lambda recombination functions to promote gene replacement in Escherichia coli. J. Bacteriol. 180, 2063–2071 (1998).

    CAS  PubMed  PubMed Central  Google Scholar 

  7. Angrand, P.O., Daigle, N., van der Hoeven, F., Scholer, H.R. & Stewart, A.F. Simplified generation of targeting constructs using ET recombination. Nucleic Acids Res. 27, e16 (1999).

    Article  CAS  Google Scholar 

  8. Koller, B.H. & Smithies, O. Altering genes in animals by gene targeting. Annu. Rev. Immunol. 10, 705–730 (1992).

    Article  CAS  Google Scholar 

  9. Soriano, P. Gene targeting in ES cells. Annu. Rev. Neurosci. 18, 1–18 (1995).

    Article  CAS  Google Scholar 

  10. Deng, C. & Capecchi, M.R. Reexamination of gene targeting frequency as a function of the extent of homology between the targeting vector and the target locus. Mol. Cell Biol. 12, 3365–3371 (1992).

    Article  CAS  Google Scholar 

  11. Hasty, P., Rivera-Perez, J. & Bradley, A. The length of homology required for gene targeting in embryonic stem cells. Mol. Cell Biol. 11, 5586–5591 (1991).

    Article  CAS  Google Scholar 

  12. Poteete, A.R. & Fenton, A.C. Lambda red-dependent growth and recombination of phage P22. Virology 134, 161–167 (1984).

    Article  CAS  Google Scholar 

  13. El Karoui, M., Amundsen, S.K., Dabert, P. & Gruss, A. Gene replacement with linear DNA in electroporated wild-type Escherichia coli. Nucleic Acids Res. 27, 1296–1299 (1999).

    Article  CAS  Google Scholar 

  14. Deichmann, M., Bentz, M. & Haas, R. Ultra-sensitive FISH is a useful tool for studying chronic HIV-1 infection. J. Virol. Methods 65, 19–25 (1997).

    Article  CAS  Google Scholar 

  15. Reid, L.H., Shesely, E.G., Kim, H.S. & Smithies, O. Cotransformation and gene targeting in mouse embryonic stem cells. Mol. Cell Biol. 11, 2769–2777 (1991).

    Article  CAS  Google Scholar 

  16. Bollag, R.J., Waldman, A.S. & Liskay, R.M. Homologous recombination in mammalian cells. Annu. Rev. Genet. 23, 199–225 (1989).

    Article  CAS  Google Scholar 

  17. Capecchi, M.R. Altering the genome by homologous recombination. Science 244, 1288–1292 (1989).

    Article  CAS  Google Scholar 

  18. Thyagarajan, B., McCormick-Graham, M., Romero, D.P. & Campbell, C. Characterization of homologous DNA recombination activity in normal and immortal mammalian cells. Nucleic Acids Res. 24, 4084–4091 (1996).

    Article  CAS  Google Scholar 

  19. Yang, Y. et al. Targeted disruption of the murine Fanconi anemia gene, Fancg/Xrcc9. Blood 98, 3435–3440 (2001).

    Article  CAS  Google Scholar 

Download references

Acknowledgements

We thank Naifang Lu and Jeannie T. Lee for help in developing the FISH protocol, Naifang Lu for blastocyst injections, and Vidya Kunjathoor, Yanhong Ma, and Amy Stirman for assistance. This work was supported by grants from the US National Institutes of Health (AI27849, AI46731, and HL66678 to B.S.) and a postdoctoral fellowship from the Cancer Research Institute (to Y.Y.).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Brian Seed.

Ethics declarations

Competing interests

The authors declare no competing financial interests.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Yang, Y., Seed, B. Site-specific gene targeting in mouse embryonic stem cells with intact bacterial artificial chromosomes. Nat Biotechnol 21, 447–451 (2003). https://doi.org/10.1038/nbt803

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/nbt803

This article is cited by

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing