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Crystal structure of γ-tubulin complex protein GCP4 provides insight into microtubule nucleation

Abstract

Microtubule nucleation in all eukaryotes involves γ-tubulin small complexes (γTuSCs) that comprise two molecules of γ-tubulin bound to γ-tubulin complex proteins (GCPs) GCP2 and GCP3. In many eukaryotes, multiple γTuSCs associate with GCP4, GCP5 and GCP6 into large γ-tubulin ring complexes (γTuRCs). Recent cryo-EM studies indicate that a scaffold similar to γTuRCs is formed by lateral association of γTuSCs, with the C-terminal regions of GCP2 and GCP3 binding γ-tubulin molecules. However, the exact role of GCPs in microtubule nucleation remains unknown. Here we report the crystal structure of human GCP4 and show that its C-terminal domain binds directly to γ-tubulin. The human GCP4 structure is the prototype for all GCPs, as it can be precisely positioned within the γTuSC envelope, revealing the nature of protein-protein interactions and conformational changes regulating nucleation activity.

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Figure 1: The crystal structure of GCP4 reveals a previously undescribed fold.
Figure 2: GCP4 binds to γ-tubulin through its C-terminal domain.
Figure 3: A molecular model of γTuSC.

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References

  1. Moritz, M. & Agard, D.A. Gamma-tubulin complexes and microtubule nucleation. Curr. Opin. Struct. Biol. 11, 174–181 (2001).

    Article  CAS  Google Scholar 

  2. Kollman, J.M., Polka, J.K., Zelter, A., Davis, T.N. & Agard, D.A. Microtubule nucleating gamma-TuSC assembles structures with 13-fold microtubule-like symmetry. Nature 466, 879–882 (2010).

    Article  CAS  Google Scholar 

  3. Kollman, J.M. et al. The structure of the gamma-tubulin small complex: implications of its architecture and flexibility for microtubule nucleation. Mol. Biol. Cell 19, 207–215 (2008).

    Article  CAS  Google Scholar 

  4. Aldaz, H., Rice, L.M., Stearns, T. & Agard, D.A. Insights into microtubule nucleation from the crystal structure of human gamma-tubulin. Nature 435, 523–527 (2005).

    Article  CAS  Google Scholar 

  5. Gunawardane, R.N. et al. Characterization and reconstitution of Drosophila gamma-tubulin ring complex subunits. J. Cell Biol. 151, 1513–1524 (2000).

    Article  CAS  Google Scholar 

  6. Murphy, S.M. et al. GCP5 and GCP6: two new members of the human gamma-tubulin complex. Mol. Biol. Cell 12, 3340–3352 (2001).

    Article  CAS  Google Scholar 

  7. Fava, F. et al. Human 76p: A new member of the gamma-tubulin-associated protein family. J. Cell Biol. 147, 857–868 (1999).

    Article  CAS  Google Scholar 

  8. Nakamura, M. & Hashimoto, T. A mutation in the Arabidopsis gamma-tubulin-containing complex causes helical growth and abnormal microtubule branching. J. Cell Sci. 122, 2208–2217 (2009).

    Article  CAS  Google Scholar 

  9. Knop, M., Pereira, G., Geissler, S., Grein, K. & Schiebel, E. The spindle pole body component Spc97p interacts with the gamma-tubulin of Saccharomyces cerevisiae and functions in microtubule organization and spindle pole body duplication. EMBO J. 16, 1550–1564 (1997).

    Article  CAS  Google Scholar 

  10. Choy, R.M., Kollman, J.M., Zelter, A., Davis, T.N. & Agard, D.A. Localization and orientation of the gamma-tubulin small complex components using protein tags as labels for single particle EM. J. Struct. Biol. 168, 571–574 (2009).

    Article  CAS  Google Scholar 

  11. Inclán, Y.F. & Nogales, E. Structural models for the self-assembly and microtubule interactions of gamma-, delta- and epsilon-tubulin. J. Cell Sci. 114, 413–422 (2001).

    PubMed  Google Scholar 

  12. Masuda, H., Sevik, M. & Cande, W.Z. In vitro microtubule-nucleating activity of spindle pole bodies in fission yeast Schizosaccharomyces pombe: cell cycle-dependent activation in Xenopus cell-free extracts. J. Cell Biol. 117, 1055–1066 (1992).

    Article  CAS  Google Scholar 

  13. Oppermann, F.S. et al. Large-scale proteomics analysis of the human kinome. Mol. Cell. Proteomics 8, 1751–1764 (2009).

    Article  CAS  Google Scholar 

  14. Zhang, L., Keating, T.J., Wilde, A., Borisy, G.G. & Zheng, Y. The role of Xgrip210 in gamma-tubulin ring complex assembly and centrosome recruitment. J. Cell Biol. 151, 1525–1536 (2000).

    Article  CAS  Google Scholar 

  15. Vérollet, C. et al. Drosophila melanogaster gamma-TuRC is dispensable for targeting gamma-tubulin to the centrosome and microtubule nucleation. J. Cell Biol. 172, 517–528 (2006).

    Article  Google Scholar 

  16. Vogt, N., Koch, I., Schwarz, H., Schnorrer, F. & Nusslein-Volhard, C. The gammaTuRC components Grip75 and Grip128 have an essential microtubule-anchoring function in the Drosophila germline. Development 133, 3963–3972 (2006).

    Article  CAS  Google Scholar 

  17. Izumi, N., Fumoto, K., Izumi, S. & Kikuchi, A. GSK-3beta regulates proper mitotic spindle formation in cooperation with a component of the gamma-tubulin ring complex, GCP5. J. Biol. Chem. 283, 12981–12991 (2008).

    Article  CAS  Google Scholar 

  18. Xiong, Y. & Oakley, B.R. In vivo analysis of the functions of gamma-tubulin-complex proteins. J. Cell Sci. 122, 4218–4227 (2009).

    Article  CAS  Google Scholar 

  19. Choi, Y.K., Liu, P., Sze, S.K., Dai, C. & Qi, R.Z. CDK5RAP2 stimulates microtubule nucleation by the gamma-tubulin ring complex. J. Cell Biol. 191, 1089–1095 (2010).

    Article  CAS  Google Scholar 

  20. Vinh, D.B., Kern, J.W., Hancock, W.O., Howard, J. & Davis, T.N. Reconstitution and characterization of budding yeast gamma-tubulin complex. Mol. Biol. Cell 13, 1144–1157 (2002).

    Article  CAS  Google Scholar 

  21. Diederichs, K. & Karplus, P.A. Improved R-factors for diffraction data analysis in macromolecular crystallography. Nat. Struct. Biol. 4, 269–275 (1997).

    Article  CAS  Google Scholar 

  22. Laemmli, U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680–685 (1970).

    Article  CAS  Google Scholar 

  23. LeMaster, D.M. & Richards, F.M. 1H-15N heteronuclear NMR studies of Escherichia coli thioredoxin in samples isotopically labeled by residue type. Biochemistry 24, 7263–7268 (1985).

    Article  CAS  Google Scholar 

  24. Julian, M. et al. γ-Tubulin participates in the formation of the midbody during cytokinesis in mammalian cells. J. Cell Sci. 105, 145–156 (1993).

    CAS  PubMed  Google Scholar 

  25. Kabsch, W. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J. Appl. Crystallogr. 26, 795–800 (1993).

    Article  CAS  Google Scholar 

  26. Sheldrick, G.M. A short history of SHELX. Acta Crystallogr. A 64, 112–122 (2008).

    Article  CAS  Google Scholar 

  27. McCoy, A.J. et al. Phaser crystallographic software. J. Appl. Crystallogr. 40, 658–674 (2007).

    Article  CAS  Google Scholar 

  28. Cowtan, K. & Main, P. Miscellaneous algorithms for density modification. Acta Crystallogr. D Biol. Crystallogr. 54, 487–493 (1998).

    Article  CAS  Google Scholar 

  29. Cowtan, K. The Buccaneer software for automated model building. 1. Tracing protein chains. Acta Crystallogr. D Biol. Crystallogr. 62, 1002–1011 (2006).

    Article  Google Scholar 

  30. Emsley, P. & Cowtan, K. Coot: model-building tools for molecular graphics. Acta Crystallogr. D Biol. Crystallogr. 60, 2126–2132 (2004).

    Article  Google Scholar 

  31. Storoni, L.C., McCoy, A.J. & Read, R.J. Likelihood-enhanced fast rotation functions. Acta Crystallogr. D Biol. Crystallogr. 60, 432–438 (2004).

    Article  Google Scholar 

  32. Murshudov, G.N., Vagin, A.A. & Dodson, E.J. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D Biol. Crystallogr. 53, 240–255 (1997).

    Article  CAS  Google Scholar 

  33. Laskowski, R.A., MacArthur, M.W., Moss, D.S. & Thornton, J.M. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26, 283–291 (1993).

    Article  CAS  Google Scholar 

  34. Potterton, E., Briggs, P., Turkenburg, M. & Dodson, E. A graphical user interface to the CCP4 program suite. Acta Crystallogr. D Biol. Crystallogr. 59, 1131–1137 (2003).

    Article  Google Scholar 

  35. Larkin, M.A. et al. Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947–2948 (2007).

    Article  CAS  Google Scholar 

  36. Galtier, N., Gouy, M. & Gautier, C. SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci. 12, 543–548 (1996).

    CAS  PubMed  Google Scholar 

  37. Gouet, P., Courcelle, E., Stuart, D. & Metoz, F. ESPript: multiple sequence alignments in PostScript. Bioinformatics 15, 305–308 (1998).

    Article  Google Scholar 

  38. Pettersen, E.F. et al. UCSF Chimera–a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605–1612 (2004).

    Article  CAS  Google Scholar 

  39. Suhre, K. & Sanejouand, Y.H. ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Res. 32, W610–W614 (2004).

    Article  CAS  Google Scholar 

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Acknowledgements

We thank M. Wright and J.-E. Gairin (Centre de Recherche en Pharmacologie-Santé, Centre National de la Recherche Scientifique Pierre Fabre, Toulouse) for their advice and support; the staff of synchrotron beamlines PROXIMA 1 at SOLEIL Synchrotron, ID14-1, ID14-2, ID23-2 and ID29 at the European Synchrotron Radiation Facility; P. Legrand from the PROXIMA 1 beamline for his help during data collection and preliminary calculation of experimental phases; and F. Viala for her help in preparing the figures. This project was financed in part with grant 08-BLAN-0281 from the French 'Agence Nationale de la Recherche' (A.M. and L.M.) and by the Howard Hughes Medical Institute and the US National Institutes of Health grant GM31627 (J.M.K. and D.A.A.).

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Contributions

V.G. helped optimize protein production and purification, grew the crystals and conducted diffraction data collection, analyzed the structure, prepared figures and participated in manuscript writing. M.K. optimized native and SeMet-labeled protein production and purification. L.G.-P. participated in data processing and did structure determination and refinement, analyzed the structure and helped prepare tables and figures. M.-H.R. made the constructs, produced and purified the proteins, carried out Flag pulldown experiments and prepared figures. C.C. made the constructs and carried out Flag pulldown experiments. B.R.-M. did initial purification studies. C.B. participated in protein characterization. J.M.K. analyzed structure-function relationships, carried out the fitting into the cryo-EM map of γTuSC and prepared figures. D.A.A. analyzed the data and revised the manuscript. A.M. devised the experiments, designed figures and wrote the manuscript. L.M. devised the experiments, participated in diffraction data collection, analyzed the structure, designed tables and figures and wrote the manuscript.

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Correspondence to Andreas Merdes or Lionel Mourey.

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The authors declare no competing financial interests.

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Supplementary Figures 1–7, Supplementary Table 1 and Supplementary Discussion (PDF 18948 kb)

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Guillet, V., Knibiehler, M., Gregory-Pauron, L. et al. Crystal structure of γ-tubulin complex protein GCP4 provides insight into microtubule nucleation. Nat Struct Mol Biol 18, 915–919 (2011). https://doi.org/10.1038/nsmb.2083

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