Molecular & Cellular Proteomics
ResearchA Proteome-wide, Quantitative Survey of In Vivo Ubiquitylation Sites Reveals Widespread Regulatory Roles*
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This work is supported by the European Commission's 7th Framework Programme grants Proteomics Research Infrastructure Maximizing knowledge EXchange and access (XS) (INFRASTRUCTURES-F7-2010-262067/PRIME-XS) and Systems Biology of Stem Cells and Reprogramming (HEALTH-F7-2010-242129/SYBOSS), and the Lundbeck Foundation (R48-A4649). SAW is supported by a postdoctoral grant from Danish Council for Independent Research (FSS: 10-085134). The Center for Protein Research is funded by a generous grant from the Novo Nordisk Foundation.
This article contains supplemental Figs. S1 to S3 and Tables S1 to S3.
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The abbreviations used are:
- PTM
post-translational modification
- UPS
ubiquitin proteasome system
- SILAC
stable isotope labeling by amino acids in cell culture
- HCD
higher-energy C-trap dissociation
- GO
gene ontology
- RTK
receptor tyrosine kinase
- di-Gly
di-glycine.
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These authors contributed equally to this work.