1887

Abstract

A pale-pink strain (CC-FR2-10) from the rhizosphere of the sacred tree L. in Taiwan was investigated by using a polyphasic taxonomic approach. The cells were Gram-positive, rod-shaped and non-spore-forming. Phylogenetic analyses using the 16S rRNA gene sequence of the isolate indicated that the organism belongs to the genus , the highest sequence similarities being found with (96·1 %), (94·3 %), (93·2 %), (93·0 %), (92·5 %), (92·4 %) and (90·7 %). The DNA–DNA relatedness with respect to DSM 3963 was 17·9 %. Chemotaxonomic data revealed that strain CC-FR2-10 contains only menaquinone MK-8 as the respiratory quinone, unknown phosphoglycolipids as the predominant polar lipids and 16 : 17, 17 : 18 and 17 : 19 iso as the predominant fatty acids. The biochemical and chemotaxonomic properties demonstrate that strain CC-FR2-10 represents a novel species, for which the name sp. nov. is proposed. The type strain is CC-FR2-10 (=CCUG 53391=CIP 108832).

Erratum

An erratum has been published for this content:
sp. nov., isolated from the rhizosphere of L.
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2006-04-01
2024-03-28
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References

  1. Altenburger P., Kämpfer P., Makristathis A., Lubitz W., Busse H.-J. 1996; Classification of bacteria isolated from a medieval wall painting. J Biotechnol 47:39–52 [CrossRef]
    [Google Scholar]
  2. Brooks B. W., Murray R. G. E. 1981; Nomenclature for “ Micrococcus radiodurans ” and other radiation-resistant cocci: Deinococcaceae fam. nov. and Deinococcus gen. nov. including five species. Int J Syst Bacteriol 31:353–360 [CrossRef]
    [Google Scholar]
  3. Brosius J., Palmer M. L., Kennedy P. J., Noller H. R. 1978; Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli . Proc Natl Acad Sci U S A 75:4801–4805 [CrossRef]
    [Google Scholar]
  4. Cowan S. T. 1974 Cowan and Steel's Manual for the Identification of Medical Bacteria , 2nd edn. Cambridge: Cambridge University Press;
    [Google Scholar]
  5. de Groot A., Chapon V., Servant P., Christen R., Saux M. F., Sommer S., Heulin T. 2005; Deinococcus deserti sp. nov. a gamma-radiation-tolerant bacterium isolated from the Sahara Desert. Int J Syst Evol Microbiol 55:2441–2446 [CrossRef]
    [Google Scholar]
  6. Degryse E., Glansdorff N., Pierard A. 1978; A comparative analysis of extreme thermophilic bacteria belonging to the genus Thermus . Arch Microbiol 117:189–196 [CrossRef]
    [Google Scholar]
  7. Edwards U., Rogall T., Blocker H., Emde M., Böttger E. C. 1989; Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17:7843–7853 [CrossRef]
    [Google Scholar]
  8. Embley T. M., O'Donnell A. G., Watt R., Rostron J. 1987; Lipid and cell wall amino acid composition in the classification of members of the genus Deinococcus . Syst Appl Microbiol 10:20–27 [CrossRef]
    [Google Scholar]
  9. Fautz E., Reichenbach H. 1980; A simple test for flexirubin-type pigments. FEMS Microbiol Lett 8:87–91 [CrossRef]
    [Google Scholar]
  10. Ferreira A. C., Nobre F. M., Rainey F. A., Silva M. T., Wait R., Burghardt J., Chung A. P., Da Costa M. S. 1997; Deinococcus geothermalis sp. nov. and Deinococcus murrayi sp. nov., two extremely radiation-resistant and slightly thermophilic species from hot springs. Int J Syst Bacteriol 47:939–947 [CrossRef]
    [Google Scholar]
  11. Hirsch P., Gallikowski C. A., Siebert J., Peissl K., Kroppenstedt R. M., Schumann P., Stackebrandt E., Anderson R. 2004; Deinococcus frigens sp. nov. Deinococcus saxicola sp. nov., and Deinococcus marmoris sp. nov., low temperature and draught-tolerating, UV-resistant bacteria from continental Antarctica. Syst Appl Microbiol 27:636–645 [CrossRef]
    [Google Scholar]
  12. Kämpfer P., Kroppenstedt R. M. 1996; Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42:989–1005 [CrossRef]
    [Google Scholar]
  13. Kämpfer P., Dreyer U., Neef A., Dott W., Busse H.-J. 2003; Chryseobacterium defluvii sp. nov., isolated from wastewater. Int J Syst Evol Microbiol 53:93–97 [CrossRef]
    [Google Scholar]
  14. Kumar S., Tamura K., Jakobsen I.-B., Nei M. 2001; mega2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244–1245 [CrossRef]
    [Google Scholar]
  15. Mattimore V., Battista J. R. 1996; Radioresistance of Deinococcus radiodurans : functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation. J Bacteriol 178:633–637
    [Google Scholar]
  16. Oyaizu H., Stackebrandt E., Schleifer K. H., Ludwig W., Pohla H., Ito H., Hirata A., Oyaizu Y., Komagata K. 1987; A radiation-resistant rod-shaped bacterium, Deinobacter grandis gen. nov., sp. nov. with peptidoglycan containing ornithine. Int J Syst Bacteriol 3762–67 [CrossRef]
    [Google Scholar]
  17. Rainey F. A., Nobre M. F., Schumann P., Stackebrandt E., Da Costa M. S. 1997; Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison. Int J Syst Bacteriol 47:510–514 [CrossRef]
    [Google Scholar]
  18. Rainey F. A., Ray K., Ferreira M. 12 other authors 2005; Extensive diversity of ionizing-radiation-resistant bacteria recovered from Sonoran Desert soil and description of nine new species of the genus Deinococcus obtained from a single soil sample. Appl Environ Microbiol 71:5225–5235 [CrossRef]
    [Google Scholar]
  19. Shen F. T., Kämpfer P., Young C. C., Lai W. A., Arun A. B. 2005; Chryseobacterium taichungense sp. nov., isolated from contaminated soil. Int J Syst Evol Microbiol 55:1301–1304 [CrossRef]
    [Google Scholar]
  20. Suresh K., Reddy G. S. N., Sengupta S., Shivaji S. 2004; Deinococcus indicus sp. nov., an arsenic-resistant bacterium from an aquifer in West Bengal, India. Int J Syst Evol Microbiol 54:457–461 [CrossRef]
    [Google Scholar]
  21. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [CrossRef]
    [Google Scholar]
  22. Tindall B. J. 1990; Lipid composition of Halobacterium lacusprofundi . FEMS Microbiol Lett 66:199–202 [CrossRef]
    [Google Scholar]
  23. Ziemke F., Höfle M. G., Lalucat J., Rosselló-Mora R. 1998; Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48:179–186 [CrossRef]
    [Google Scholar]
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